##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933480.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 403944 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.254490721486146 31.0 28.0 31.0 25.0 34.0 2 28.185055354207513 31.0 25.0 33.0 16.0 34.0 3 28.21594825025251 31.0 25.0 33.0 16.0 34.0 4 32.91839215336779 35.0 32.0 37.0 28.0 37.0 5 34.173920147347154 35.0 33.0 37.0 30.0 37.0 6 33.33938120135464 35.0 32.0 37.0 28.0 37.0 7 33.48354969995841 35.0 32.0 37.0 29.0 37.0 8 33.21959974649951 35.0 32.0 37.0 28.0 37.0 9 34.57499306834611 37.0 34.0 39.0 28.0 39.0 10 34.529632820390944 37.0 32.0 39.0 27.0 39.0 11 34.717079595191414 37.0 34.0 39.0 27.0 39.0 12 34.742506387023944 37.0 33.0 39.0 27.0 39.0 13 34.77427564216822 37.0 33.0 39.0 27.0 39.0 14 35.5913715762581 38.0 34.0 40.0 27.0 41.0 15 35.82033895787535 38.0 34.0 40.0 27.0 41.0 16 35.90980680490365 38.0 34.0 40.0 29.0 41.0 17 35.13111470896956 37.0 33.0 40.0 27.0 41.0 18 34.97091923632979 37.0 33.0 39.0 27.0 40.0 19 34.422501633889844 37.0 33.0 38.0 27.0 40.0 20 33.57783752203276 35.0 32.0 38.0 25.0 40.0 21 34.22669726496742 35.0 33.0 38.0 27.0 40.0 22 34.8538287485394 35.0 33.0 39.0 29.0 40.0 23 35.083600697126336 35.0 33.0 39.0 29.0 40.0 24 34.705684451310084 35.0 33.0 39.0 27.0 40.0 25 33.71812429445666 35.0 33.0 38.0 24.0 40.0 26 33.798165092191 35.0 32.0 38.0 25.0 40.0 27 34.41030192303884 35.0 33.0 39.0 27.0 40.0 28 34.07062117521241 35.0 33.0 39.0 25.0 40.0 29 34.04804626383855 35.0 33.0 39.0 24.0 40.0 30 33.501725486701126 35.0 33.0 39.0 22.0 40.0 31 33.48481967797517 35.0 33.0 39.0 23.0 40.0 32 33.02339433188759 35.0 32.0 39.0 20.0 40.0 33 32.55131404353079 35.0 31.0 39.0 15.0 40.0 34 32.088485037529956 35.0 31.0 39.0 12.0 40.0 35 31.690548689917414 35.0 30.0 40.0 10.0 41.0 36 31.340628899055314 35.0 29.0 40.0 8.0 41.0 37 31.08197670964292 35.0 28.0 40.0 8.0 40.0 38 30.957729289208405 35.0 27.0 39.0 8.0 40.0 39 30.59956578139544 35.0 26.0 39.0 7.0 40.0 40 30.317808904204544 35.0 24.0 39.0 8.0 40.0 41 29.840086744697285 35.0 23.0 39.0 7.0 40.0 42 30.121276711623395 35.0 23.0 39.0 7.0 40.0 43 30.08893807062365 35.0 23.0 39.0 7.0 40.0 44 30.207724338027052 35.0 23.0 39.0 7.0 40.0 45 30.321274731150854 35.0 24.0 39.0 7.0 40.0 46 30.078721307904065 35.0 23.0 39.0 7.0 40.0 47 29.87096231160755 35.0 23.0 39.0 7.0 40.0 48 29.706818271839662 35.0 23.0 38.0 7.0 40.0 49 29.997915552650863 35.0 24.0 39.0 7.0 40.0 50 29.910920820707823 35.0 24.0 39.0 7.0 40.0 51 28.639935238547917 34.0 22.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 10.0 9 13.0 10 32.0 11 31.0 12 37.0 13 44.0 14 72.0 15 125.0 16 200.0 17 461.0 18 837.0 19 1564.0 20 2463.0 21 3644.0 22 4919.0 23 7054.0 24 9593.0 25 13876.0 26 17909.0 27 19222.0 28 18027.0 29 17647.0 30 18642.0 31 21271.0 32 24917.0 33 29308.0 34 33018.0 35 38439.0 36 41277.0 37 41396.0 38 32837.0 39 5057.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.94650743667439 2.2834848394827008 30.32276751232844 35.44724021151447 2 33.76111540213495 21.44703226189769 31.34840472936843 13.443447606598935 3 11.44737884459232 21.55174974748975 53.8554849187016 13.145386489216326 4 10.95770700889232 2.8593072307052463 70.95141900857544 15.231566751826985 5 25.510961915513043 3.383142217733151 53.38982631255818 17.71606955419563 6 13.362743350563445 18.86523874596479 57.162626502683544 10.609391400788228 7 51.62869110569782 1.4405462143267382 43.94668567920306 2.984077000772384 8 50.12848315608104 14.806755391836493 31.34023528013784 3.724526171944626 9 47.29343671399996 3.106866298298774 29.915037728001902 19.684659259699362 10 29.80833976986909 19.837403204404573 36.66721129661537 13.687045729110967 11 27.11217396470798 15.302121086091141 43.901134810765846 13.684570138435031 12 20.72515002079496 13.526379894242766 45.08298179945735 20.66548828550492 13 19.367288535044462 14.740904679856614 53.91564177212683 11.976165012972096 14 15.743766462677995 22.09836016873626 44.12047214465372 18.037401223932033 15 11.512734438437011 15.462539361891746 57.12400728813895 15.900718911532291 16 14.245786544669558 17.333343235696034 43.71695086447626 24.703919355158142 17 15.267957934763235 18.051759649852457 50.10075654051056 16.579525874873745 18 14.402243875388669 17.059542906937594 48.37254668964015 20.165666528033587 19 14.762442318737252 20.06812825540174 44.51978492068208 20.649644505178934 20 16.480007129701146 19.357881290475905 51.5108529895233 12.651258590299646 21 16.768661002515202 24.686095102291404 45.15229833838354 13.392945556809854 22 14.528003881726178 14.470075059909293 49.32985760402432 21.672063454340208 23 14.812449250391143 23.58817063751411 46.845354801655674 14.75402531043907 24 16.68325312419543 17.692303883706654 43.6582793654566 21.966163626641315 25 13.884597865050601 28.139048977085935 41.093072307052466 16.883280850811 26 14.859980591369101 16.007169310597508 47.85391044303171 21.278939655001682 27 17.32245063672192 20.208989364862457 42.599716792426676 19.86884320598895 28 12.359634008674469 19.43388192422712 49.6442576198681 18.56222644723031 29 21.767621254431308 17.494504188699423 42.69725506505852 18.040619491810748 30 14.613164200978353 25.78154397639277 45.62909710256867 13.976194720060207 31 18.89073732992692 16.92313786069356 43.25079714019765 20.935327669181866 32 22.081278593072305 25.03861921454459 38.70189927316658 14.178202919216526 33 16.475798625552056 18.139395559780564 40.864575287663634 24.520230527003744 34 24.03031113223615 19.73837957736716 37.99784128493059 18.233468005466104 35 18.826371972352604 25.963004772938824 35.86932842176143 19.341294832947142 36 20.69717584615689 20.027776127383994 38.35407878319767 20.920969243261442 37 16.967698492860396 29.618461965024856 36.624878696056875 16.78896084605787 38 18.900887251698258 21.899570237458658 39.90800705048225 19.29153546036084 39 19.73565642762363 25.059909294357634 33.159546867882675 22.044887410136056 40 22.425138137959717 21.0487097221397 38.929901174420216 17.596250965480365 41 17.333838353831226 23.18242132572832 32.500544629948706 26.98319569049175 42 20.545174578654468 21.798318578812907 39.62207632741172 18.03443051512091 43 20.66449804923455 20.378567326164024 33.27317647990811 25.683758144693325 44 20.919236329788287 22.28353435129622 34.991236409007186 21.805992909908305 45 17.622492226645278 20.867991602796426 36.421632701562594 25.087883468995702 46 23.404481809359716 25.507496088566732 31.71330679500129 19.374715307072268 47 15.385796050937753 20.853880735943598 44.48685956469214 19.273463648426514 48 20.262214564395066 24.014219792842574 32.08340760105361 23.64015804170875 49 19.003376705681976 20.062681955914684 39.34580040797734 21.588140930426 50 19.411106490008518 19.607173271542592 36.21888182520349 24.7628384132454 51 20.065652664725803 20.38104291683996 33.42790089715406 26.125403521280177 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 45.0 1 591.0 2 1137.0 3 11897.0 4 22657.0 5 16808.5 6 10960.0 7 10673.0 8 10386.0 9 10125.5 10 9865.0 11 9409.5 12 8954.0 13 8401.0 14 7848.0 15 7143.5 16 6439.0 17 5957.5 18 5476.0 19 5022.5 20 4569.0 21 4374.5 22 4180.0 23 3997.5 24 3815.0 25 3999.0 26 4128.0 27 4073.0 28 4555.5 29 5038.0 30 5598.0 31 6158.0 32 6637.5 33 7117.0 34 7943.5 35 8770.0 36 9158.5 37 9547.0 38 9963.5 39 10380.0 40 10996.5 41 11613.0 42 12609.5 43 13606.0 44 15115.5 45 16625.0 46 45440.0 47 74255.0 48 50329.0 49 26403.0 50 24252.0 51 22101.0 52 19009.0 53 15917.0 54 15482.0 55 15047.0 56 14183.5 57 13320.0 58 12412.5 59 11505.0 60 10245.0 61 8985.0 62 7949.0 63 6913.0 64 6046.5 65 5180.0 66 4415.0 67 3650.0 68 3080.5 69 2511.0 70 2110.0 71 1709.0 72 1442.0 73 1175.0 74 984.5 75 674.0 76 554.0 77 392.0 78 230.0 79 176.0 80 122.0 81 101.0 82 80.0 83 51.5 84 23.0 85 16.0 86 9.0 87 8.5 88 8.0 89 8.0 90 8.0 91 4.5 92 1.0 93 0.5 94 0.0 95 1.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 403944.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.98826961818319 #Duplication Level Percentage of deduplicated Percentage of total 1 83.73273756737616 35.15792760847567 2 5.1230896701425035 4.302193406961453 3 2.0560476434472856 2.5898964840268444 4 1.3575852880872836 2.28010628423551 5 1.0797202580107688 2.2667792652785237 6 0.9219759179778377 2.322730405531524 7 0.8487263081817619 2.494558434198674 8 0.6998817490147647 2.350945886278205 9 0.6371141024842946 2.4076186841391625 >10 3.444383563589609 22.05636559943212 >50 0.06245471582659301 1.7619798313300925 >100 0.027955920417617828 2.202037728254773 >500 0.002379227269584496 0.7065401761634063 >1k 0.003568840904376744 3.9108210033731985 >5k 0.0 0.0 >10k+ 0.002379227269584496 13.189499202320839 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCG 16736 4.143148555245282 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGC 12806 3.1702414196027173 No Hit GAATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC 11966 2.962291802824154 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11303 2.7981601410096446 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTC 2847 0.7048006654387736 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATATCGCT 2747 0.6800447586794209 No Hit GAATGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT 2632 0.6515754659061652 No Hit GCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC 2545 0.6300378270255284 Illumina Single End Adapter 1 (95% over 21bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTA 2484 0.6149367239023231 No Hit GAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT 2404 0.5951319984948409 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGATATCGCTCGT 882 0.21834709761749155 No Hit GAATGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTT 781 0.1933436317905452 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTAT 640 0.1584378032598578 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATG 526 0.13021606955419565 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0915968550096053 0.0 2 0.0 0.0 0.0 0.8402154754124334 0.0 3 0.0 0.0 0.0 0.9578060325193591 0.0 4 2.4755906759352784E-4 0.0 0.0 1.6878577228526725 0.0 5 2.4755906759352784E-4 0.0 0.0 5.132889707484206 0.0 6 2.4755906759352784E-4 0.0 0.0 5.429713029528846 0.0 7 2.4755906759352784E-4 0.0 0.0 6.240964094032837 0.0 8 2.4755906759352784E-4 0.0 0.0 7.1146000435703955 0.0 9 2.4755906759352784E-4 0.0 0.0 7.250262412611649 0.0 10 2.4755906759352784E-4 0.0 0.0 12.12247242191987 0.0 11 2.4755906759352784E-4 0.0 0.0 12.333145188441963 0.0 12 2.4755906759352784E-4 0.0 0.0 16.14109876616561 0.0 13 2.4755906759352784E-4 0.0 0.0 16.41341374051849 0.0 14 2.4755906759352784E-4 0.0 0.0 16.64512902778603 0.0 15 2.4755906759352784E-4 0.0 0.0 17.450438674667776 0.0 16 2.4755906759352784E-4 0.0 0.0 17.81212247242192 0.0 17 2.4755906759352784E-4 0.0 0.0 17.986651615075356 0.0 18 2.4755906759352784E-4 0.0 0.0 18.125284692927732 0.0 19 2.4755906759352784E-4 0.0 0.0 19.149931673697346 0.0 20 2.4755906759352784E-4 0.0 0.0 19.371497039193553 0.0 21 2.4755906759352784E-4 0.0 0.0 19.507159408234806 0.0 22 2.4755906759352784E-4 0.0 0.0 19.786406036480304 0.0 23 2.4755906759352784E-4 0.0 0.0 19.930980531954923 0.0 24 2.4755906759352784E-4 0.0 0.0 20.059711247103557 0.0 25 2.4755906759352784E-4 0.0 0.0 20.161210464816904 0.0 26 2.4755906759352784E-4 0.0 0.0 20.288950943695166 0.0 27 2.4755906759352784E-4 0.0 0.0 20.481304339215338 0.0 28 2.4755906759352784E-4 0.0 0.0 20.591468124294458 0.0 29 2.4755906759352784E-4 0.0 0.0 20.71871348503753 0.0 30 2.4755906759352784E-4 0.0 0.0 20.853138058740814 0.0 31 2.4755906759352784E-4 0.0 0.0 20.960331135008815 0.0 32 2.4755906759352784E-4 0.0 0.0 21.103915394213058 0.0 33 2.4755906759352784E-4 0.0 0.0 21.229675400550573 0.0 34 2.4755906759352784E-4 0.0 0.0 21.429950686233735 0.0 35 2.4755906759352784E-4 0.0 0.0 21.582942190006534 0.0 36 2.4755906759352784E-4 0.0 0.0 21.727764244548748 0.0 37 2.4755906759352784E-4 0.0 0.0 21.890905670092884 0.0 38 2.4755906759352784E-4 0.0 0.0 22.053799536569425 0.0 39 2.4755906759352784E-4 0.0 0.0 22.330323015071396 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTCA 20 7.027847E-4 45.000004 35 CCATCGA 20 7.027847E-4 45.000004 15 CACAATT 20 7.027847E-4 45.000004 42 TCAAGCG 20 7.027847E-4 45.000004 17 CGTTTTT 9300 0.0 44.201614 1 CCGATGA 300 0.0 43.500004 18 GATACCT 1920 0.0 43.007816 5 CGATGAA 315 0.0 42.857143 19 TACGGCT 1590 0.0 42.73585 7 ACGGCTG 1595 0.0 42.460815 8 TGATACC 1945 0.0 42.455013 4 GCGACTG 315 0.0 42.142857 11 CGGCTGT 1600 0.0 41.90625 9 ATACCTG 2005 0.0 41.745636 6 TACGGGA 65 0.0 41.538464 4 CACCGGT 60 3.6379788E-12 41.250004 16 ATGATAC 5505 0.0 41.19891 3 ATACGGC 3575 0.0 41.16084 6 AATGATA 5390 0.0 41.159554 2 GAATGAT 5705 0.0 41.13497 1 >>END_MODULE