SRR2933479.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933479.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	263007
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16743	6.365990258814404	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCG	7821	2.9736851110426716	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGC	4884	1.8569847950814997	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC	3486	1.325440007300186	No Hit
GCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	1265	0.48097579151885694	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATATCGCT	1125	0.4277452691373233	No Hit
GAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT	937	0.35626428193926396	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTC	901	0.34257643332686966	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTA	818	0.3110183379149604	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT	663	0.2520845452782626	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGATATCGCTCGTATGCCG	640	0.24333953088701063	No Hit
GAATCTTTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC	374	0.14220153836209684	No Hit
GAATGACTCTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT	352	0.13383674198785583	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGATATCGCTCGT	296	0.11254453303524241	No Hit
CCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	292	0.1110236609671986	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGCT	278	0.10570060872904523	Illumina Single End Adapter 1 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTT	268	0.1018984285589357	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGGTA	35	1.2071541E-7	45.000004	5
TTTAGCG	20	7.023356E-4	45.0	1
AAATCCC	20	7.023356E-4	45.0	25
ACACGCG	20	7.023356E-4	45.0	36
GAGTCAT	20	7.023356E-4	45.0	9
TTTGTCG	40	6.7811925E-9	45.0	1
TGAACGA	20	7.023356E-4	45.0	25
TCGTGCG	20	7.023356E-4	45.0	1
CGTGTCT	25	3.8825772E-5	45.0	20
ATGAACG	20	7.023356E-4	45.0	24
TTACACG	20	7.023356E-4	45.0	34
CGTTTTT	7160	0.0	44.46578	1
TGATACC	910	0.0	42.774723	4
CTAATCC	90	0.0	42.500004	11
GAATGAT	2440	0.0	42.141396	1
AATGATA	2330	0.0	42.00644	2
TACGGCT	645	0.0	41.860462	7
ACGGCTG	635	0.0	41.811024	8
CGGGACT	70	0.0	41.785717	6
ATGATAC	2395	0.0	41.7119	3