##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933479.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 263007 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.20786899208006 31.0 26.0 31.0 16.0 33.0 2 28.246305231419697 31.0 28.0 33.0 16.0 34.0 3 28.4266160216268 31.0 28.0 33.0 16.0 34.0 4 31.62518488101077 35.0 28.0 35.0 19.0 37.0 5 33.515986266525225 35.0 33.0 37.0 28.0 37.0 6 32.21624139281464 35.0 32.0 37.0 17.0 37.0 7 31.948685776424202 35.0 31.0 35.0 25.0 37.0 8 32.47968685244119 35.0 32.0 35.0 25.0 37.0 9 32.77232164923367 35.0 31.0 37.0 25.0 39.0 10 31.627143003798377 35.0 28.0 39.0 15.0 39.0 11 32.145863037865915 35.0 27.0 39.0 17.0 39.0 12 32.944891200614435 35.0 31.0 39.0 22.0 39.0 13 33.02458489697993 35.0 31.0 39.0 23.0 39.0 14 33.251050352271996 36.0 31.0 39.0 18.0 41.0 15 33.83759747839411 36.0 31.0 39.0 23.0 41.0 16 34.09638526731228 36.0 32.0 40.0 25.0 41.0 17 32.00201895767033 34.0 27.0 39.0 18.0 41.0 18 32.810035474340985 36.0 30.0 39.0 22.0 39.0 19 32.67614550183075 36.0 30.0 37.0 20.0 39.0 20 32.16866851452623 34.0 30.0 36.0 23.0 39.0 21 32.667332048196435 35.0 31.0 37.0 23.0 39.0 22 32.983422494458324 35.0 31.0 37.0 25.0 39.0 23 33.88434908576578 35.0 32.0 38.0 27.0 40.0 24 32.30455463162578 35.0 31.0 37.0 21.0 39.0 25 31.501450531734896 34.0 29.0 37.0 18.0 39.0 26 30.85731938693647 33.0 26.0 37.0 19.0 39.0 27 32.487093499412566 35.0 30.0 37.0 22.0 39.0 28 32.38033588459623 35.0 31.0 37.0 21.0 39.0 29 32.54731242894676 35.0 31.0 38.0 21.0 40.0 30 31.621439733543212 35.0 30.0 38.0 18.0 40.0 31 31.897858231910178 35.0 30.0 37.0 20.0 40.0 32 31.743786287057 35.0 30.0 37.0 18.0 40.0 33 31.761291524560182 35.0 30.0 38.0 16.0 40.0 34 31.001467641545663 35.0 30.0 38.0 12.0 40.0 35 30.496458269171544 35.0 27.0 38.0 10.0 40.0 36 30.03999513320938 35.0 25.0 38.0 8.0 40.0 37 29.84660104103693 35.0 25.0 38.0 8.0 40.0 38 29.957495427878346 35.0 25.0 38.0 8.0 40.0 39 29.511149893348847 34.0 24.0 38.0 8.0 40.0 40 29.192158383617166 34.0 23.0 38.0 8.0 40.0 41 28.73437208895581 33.0 22.0 37.0 7.0 40.0 42 29.23116875216249 34.0 23.0 38.0 7.0 40.0 43 29.217811693224895 34.0 23.0 38.0 7.0 40.0 44 29.151117650861003 34.0 23.0 38.0 7.0 40.0 45 29.429783237708502 34.0 23.0 38.0 7.0 40.0 46 29.122909276178962 34.0 23.0 38.0 7.0 40.0 47 29.072697684852493 34.0 23.0 38.0 7.0 40.0 48 28.883501199587844 34.0 23.0 38.0 7.0 40.0 49 28.81957134220762 34.0 23.0 37.0 7.0 40.0 50 28.946233370214483 34.0 23.0 38.0 7.0 40.0 51 27.15790074028448 32.0 20.0 35.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 6.0 10 15.0 11 24.0 12 38.0 13 39.0 14 65.0 15 179.0 16 325.0 17 606.0 18 1044.0 19 1608.0 20 2300.0 21 3129.0 22 4352.0 23 5914.0 24 7951.0 25 10771.0 26 13311.0 27 14630.0 28 14721.0 29 15290.0 30 16752.0 31 19143.0 32 21747.0 33 23695.0 34 26073.0 35 27205.0 36 19220.0 37 10521.0 38 2281.0 39 46.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.92060287368777 2.358872577535959 32.91433307858726 38.806191470189006 2 38.47730288547453 15.135718821172059 33.06908181151072 13.31789648184269 3 12.051010049162189 15.014809491762577 59.887759641378366 13.046420817696866 4 11.731626914872988 2.874448208602813 70.01220499834605 15.381719878178146 5 21.233655377993742 3.383179915363469 58.579429444843676 16.803735261799115 6 13.6931716646325 13.507625272331156 61.07670138057162 11.722501682464726 7 51.59596512640348 1.490074408665929 43.865372404536764 3.04858806039383 8 52.0723783017182 10.486793127179125 33.412038462854596 4.02879010824807 9 48.39795138532435 2.9098084841848317 33.055013744881315 15.637226385609509 10 27.223229799967303 20.353070450596373 39.049911219093026 13.373788530343301 11 24.213043759291576 15.78513119422677 47.221937058709464 12.77988798777219 12 20.222275452744604 14.017497633142845 47.85195831289661 17.908268601215937 13 17.94552996688301 15.308337800895034 54.86089723847655 11.885234993745414 14 14.883634275893797 18.7572954332014 48.08845391947743 18.270616371427376 15 11.483344549764835 15.779047705954593 57.40607664434787 15.331531099932702 16 14.206465987597289 15.476774382430886 47.323075051234376 22.993684578737447 17 14.869566209264393 16.474086241050617 51.82637724471212 16.82997030497287 18 14.109130175242484 15.760417023121057 51.27658199211428 18.85387080952218 19 15.052831293463672 18.651594824472355 47.4002593086876 18.895314573376375 20 16.015543312535407 18.27669985969955 52.79555297007305 12.912203857692 21 16.66153372343702 21.558741782538107 47.699490888075225 14.080233605949651 22 14.817476340933892 14.706832897983704 50.62450809294049 19.851182668141913 23 14.572615937978837 21.553418730299953 48.36943503404852 15.504530297672686 24 15.466888713988602 16.65887219731794 47.210530518199135 20.66370857049432 25 13.92776618112826 23.175428790868686 44.8835962540921 18.01320877391096 26 14.579459862285034 16.430741387111368 49.67358283239609 19.3162159182075 27 15.098077237487976 19.134851924093272 46.783925903112845 18.983144935305905 28 12.576471348671328 18.154269658222024 51.86097708426012 17.408281908846533 29 19.27173041021722 17.133004064530603 46.603322345032645 16.991943180219536 30 14.495431680525614 22.529058161950065 48.555361644366876 14.420148513157443 31 17.209427885949804 17.123118396088316 46.11474219317356 19.552711524788315 32 20.16752405829503 22.354538092142036 42.95893265198264 14.519005197580292 33 15.883607660632606 18.08925237731315 43.74370263909326 22.283437322960985 34 21.566726360895338 19.36792556852099 41.54566228275293 17.519685787830742 35 17.06114285931553 24.80884539194774 39.352944978650754 18.777066770085966 36 19.52647648161456 19.550049998669238 41.427794697479534 19.49567882223667 37 16.25964327945644 27.550977730630745 39.538871588969116 16.650507400943702 38 17.90598729311387 21.778888014387448 42.59696509978822 17.71815959271046 39 18.00446375951971 23.486447128783645 37.522955662777036 20.98613344891961 40 21.33745489663773 20.339382601983978 40.826289794568204 17.496872706810084 41 17.04859566475417 21.495245373697276 36.61119285798477 24.844966103563785 42 19.441307645804105 21.167877661050845 41.17114753599714 18.21966715714791 43 19.397202355830835 19.940914120156496 37.33969057857776 23.322192945434914 44 19.760310562076295 21.97013767694396 37.68759006414278 20.581961696836967 45 17.069127437672762 20.812754033162616 39.44875991893752 22.669358610227107 46 20.518465287996136 24.573110221400952 35.73174858463843 19.17667590596448 47 15.477154600447896 20.390331816263448 45.1265555669621 19.005958016326563 48 19.13295083400822 22.44579041622466 36.080408506237475 22.34085024352964 49 18.165295980715342 19.820004790747014 40.40234670560099 21.61235252293665 50 18.17556186717464 19.367165132486967 38.64041641477223 23.816856585566164 51 19.282376514693524 19.86981335097545 36.46062652324843 24.387183611082595 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 56.0 1 285.5 2 515.0 3 12039.5 4 23564.0 5 15654.0 6 7744.0 7 7383.0 8 7022.0 9 7014.0 10 7006.0 11 6651.0 12 6296.0 13 5800.0 14 5304.0 15 4775.0 16 4246.0 17 3863.0 18 3480.0 19 3194.5 20 2909.0 21 2695.0 22 2481.0 23 2395.5 24 2310.0 25 2339.0 26 2385.5 27 2403.0 28 2758.0 29 3113.0 30 3507.5 31 3902.0 32 4255.0 33 4608.0 34 5130.5 35 5653.0 36 5890.5 37 6128.0 38 6438.5 39 6749.0 40 7387.5 41 8026.0 42 8613.5 43 9201.0 44 10089.0 45 10977.0 46 22073.5 47 33170.0 48 26304.0 49 19438.0 50 17970.0 51 16502.0 52 13895.0 53 11288.0 54 10475.0 55 9662.0 56 8954.0 57 8246.0 58 7645.0 59 7044.0 60 6348.0 61 5652.0 62 5060.0 63 4468.0 64 4041.0 65 3614.0 66 3099.5 67 2585.0 68 2172.5 69 1760.0 70 1490.0 71 1220.0 72 1045.5 73 871.0 74 721.5 75 491.0 76 410.0 77 316.0 78 222.0 79 164.0 80 106.0 81 92.0 82 78.0 83 49.5 84 21.0 85 13.5 86 6.0 87 4.5 88 3.0 89 3.5 90 4.0 91 4.0 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 263007.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.0056743803767 #Duplication Level Percentage of deduplicated Percentage of total 1 78.18106817411164 32.058674242576544 2 7.510218841326894 6.159231766656413 3 3.4058731317363145 4.189803738625595 4 2.2264865812269075 3.6519433504827488 5 1.6500987912738931 3.383170686521522 6 1.2528649577798112 3.0824743500782006 7 1.001469741145512 2.874615947504911 8 0.8428668696234383 2.764985952142891 9 0.7301515839080772 2.6946322288245823 >10 3.0981563848906215 18.672227819682625 >50 0.04987373414697282 1.3865819375385562 >100 0.03989898731757825 3.01407737395918 >500 0.0049873734146972815 1.619315012010367 >1k 0.003989898731757826 4.401068332718249 >5k 9.974746829394564E-4 3.1989549656309872 >10k+ 9.974746829394564E-4 6.848242295046621 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16743 6.365990258814404 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCG 7821 2.9736851110426716 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGC 4884 1.8569847950814997 No Hit GAATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC 3486 1.325440007300186 No Hit GCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC 1265 0.48097579151885694 Illumina Single End Adapter 1 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATATCGCT 1125 0.4277452691373233 No Hit GAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT 937 0.35626428193926396 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTC 901 0.34257643332686966 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTA 818 0.3110183379149604 No Hit GAATGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT 663 0.2520845452782626 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCGATATCGCTCGTATGCCG 640 0.24333953088701063 No Hit GAATCTTTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC 374 0.14220153836209684 No Hit GAATGACTCTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT 352 0.13383674198785583 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGATATCGCTCGT 296 0.11254453303524241 No Hit CCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC 292 0.1110236609671986 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGCT 278 0.10570060872904523 Illumina Single End Adapter 1 (95% over 22bp) GAATGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTT 268 0.1018984285589357 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1315554338857901 0.0 2 0.0 0.0 0.0 0.9056793165200926 0.0 3 0.0 0.0 0.0 1.1368518708627526 0.0 4 0.0 0.0 0.0 1.7919675141726266 0.0 5 0.0 0.0 0.0 3.619295303927272 0.0 6 0.0 0.0 0.0 3.943621272437616 0.0 7 0.0 0.0 0.0 4.404065291037881 0.0 8 0.0 0.0 0.0 5.0173569524765504 0.0 9 0.0 0.0 0.0 5.173246339451041 0.0 10 0.0 0.0 0.0 8.960978224914166 0.0 11 0.0 0.0 0.0 9.542331572923915 0.0 12 0.0 0.0 0.0 12.09511533913546 0.0 13 0.0 0.0 0.0 12.357085552856008 0.0 14 0.0 0.0 0.0 12.520579300170718 0.0 15 0.0 0.0 0.0 13.046040599679856 0.0 16 0.0 0.0 0.0 13.363902861901014 0.0 17 0.0 0.0 0.0 13.686327740326304 0.0 18 0.0 0.0 0.0 13.94829795404685 0.0 19 0.0 0.0 0.0 14.729645979004362 0.0 20 0.0 0.0 0.0 15.038763226834266 0.0 21 0.0 0.0 0.0 15.341416768374986 0.0 22 0.0 0.0 0.0 15.78551141224378 0.0 23 0.0 0.0 0.0 16.077899067325205 0.0 24 0.0 0.0 0.0 16.2756124361709 0.0 25 0.0 0.0 0.0 16.47066427889752 0.0 26 0.0 0.0 0.0 16.65811176128392 0.0 27 0.0 0.0 0.0 16.871414068827065 0.0 28 0.0 0.0 0.0 17.04935610078819 0.0 29 0.0 0.0 0.0 17.25619470204215 0.0 30 0.0 0.0 0.0 17.45466850692187 0.0 31 0.0 0.0 0.0 17.628428140695874 0.0 32 0.0 0.0 0.0 17.812833878946186 0.0 33 0.0 0.0 0.0 17.98545285866916 0.0 34 0.0 0.0 0.0 18.197994730178284 0.0 35 0.0 0.0 0.0 18.414718999874527 0.0 36 0.0 0.0 0.0 18.59380168588669 0.0 37 0.0 0.0 0.0 18.785051348443197 0.0 38 0.0 0.0 0.0 19.00101518210542 0.0 39 0.0 0.0 0.0 19.335226819058047 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGGGTA 35 1.2071541E-7 45.000004 5 TTTAGCG 20 7.023356E-4 45.0 1 AAATCCC 20 7.023356E-4 45.0 25 ACACGCG 20 7.023356E-4 45.0 36 GAGTCAT 20 7.023356E-4 45.0 9 TTTGTCG 40 6.7811925E-9 45.0 1 TGAACGA 20 7.023356E-4 45.0 25 TCGTGCG 20 7.023356E-4 45.0 1 CGTGTCT 25 3.8825772E-5 45.0 20 ATGAACG 20 7.023356E-4 45.0 24 TTACACG 20 7.023356E-4 45.0 34 CGTTTTT 7160 0.0 44.46578 1 TGATACC 910 0.0 42.774723 4 CTAATCC 90 0.0 42.500004 11 GAATGAT 2440 0.0 42.141396 1 AATGATA 2330 0.0 42.00644 2 TACGGCT 645 0.0 41.860462 7 ACGGCTG 635 0.0 41.811024 8 CGGGACT 70 0.0 41.785717 6 ATGATAC 2395 0.0 41.7119 3 >>END_MODULE