SRR2933478.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933478.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	477793
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCG	18756	3.925549348776562	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGC	15166	3.174177938981944	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTC	15153	3.171457095436727	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13761	2.8801175404411534	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTC	3375	0.7063728434698708	No Hit
GAACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCT	3302	0.6910942604851892	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGCAACTAT	3302	0.6910942604851892	No Hit
GCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGC	3047	0.6377238678674656	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTA	2948	0.6170035977923494	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCT	2758	0.5772374229007122	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGCAACTATCGT	1103	0.23085311002882	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTT	959	0.20071453537410552	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTAT	705	0.14755343841370636	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATG	650	0.136042177260864	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAC	25	3.8873713E-5	45.0	24
TATGCGG	25	3.8873713E-5	45.0	2
ACGTCTA	25	3.8873713E-5	45.0	23
ATTCCGG	30	2.1628293E-6	44.999996	2
CTACGGC	30	2.1628293E-6	44.999996	6
CGTTTTT	11725	0.0	44.34755	1
CGCTTTT	295	0.0	44.237286	1
GCGACTG	430	0.0	43.430237	11
CGATGAA	470	0.0	43.085106	19
CCGATGA	465	0.0	43.064518	18
GATACCT	2180	0.0	42.729355	5
GGCGACT	455	0.0	42.52747	10
TGATACC	2225	0.0	42.37079	4
TTGTGCG	85	0.0	42.35294	1
CGGCTGT	1915	0.0	41.945168	9
ACGGCTG	1915	0.0	41.827675	8
TACGGCT	1925	0.0	41.61039	7
ATACCTG	2240	0.0	41.484375	6
ATACGGT	55	6.002665E-11	40.90909	6
CCGTTGG	55	6.002665E-11	40.90909	2