SRR2933477.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933477.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	315942
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18483	5.850124389919669	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCG	8114	2.5681928961644855	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGC	5328	1.6863854758151813	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTC	4108	1.3002386513980415	No Hit
GCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGC	1502	0.4754037133397902	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGCAACTAT	1403	0.44406884807971087	No Hit
GAACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCT	1196	0.37855049344499936	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTC	987	0.31239911122927627	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTA	919	0.29087617347487826	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCGCAACTATCGTATGCCG	673	0.2130137810104386	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCT	644	0.2038348810857689	No Hit
GAATCTTTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTC	380	0.12027524039222388	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGCAACTATCGT	370	0.11711010248716537	No Hit
CTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGCT	354	0.11204588183907173	TruSeq Adapter, Index 13 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACTG	120	0.0	45.000004	11
CGGAATA	20	7.025512E-4	45.0	20
CGGGTGA	20	7.025512E-4	45.0	6
CGGGTCG	25	3.8843624E-5	45.0	6
ACCGGTC	25	3.8843624E-5	45.0	17
GATGTCG	20	7.025512E-4	45.0	10
GGGTCGT	40	6.7884685E-9	45.0	7
AATGGTA	20	7.025512E-4	45.0	34
TACGGGA	25	3.8843624E-5	45.0	4
TCGTCGG	35	1.208191E-7	45.0	2
ATTGCGG	25	3.8843624E-5	45.0	2
TATACGG	45	3.8380676E-10	45.0	27
CGTTTTT	8825	0.0	44.464592	1
GATACCT	1110	0.0	43.378376	5
CACCGGT	125	0.0	43.199997	16
TGATACC	1140	0.0	42.82895	4
TACGGCT	780	0.0	42.692307	7
ACGGCTG	800	0.0	42.1875	8
CTACGGC	80	0.0	42.1875	6
GAATGAT	3055	0.0	41.98036	1