SRR2933476.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933476.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	916782
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37367	4.075887179285806	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTC	32605	3.556461623373932	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCG	31628	3.449893213435691	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGC	27632	3.014020781385324	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCT	7945	0.8666182363964388	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTGGGTTT	6862	0.7484876448272326	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	6428	0.7011481464513919	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTC	6089	0.6641709806693412	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCT	5432	0.5925072699943934	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTA	5376	0.5863989476233172	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTT	3229	0.3522102310036628	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGT	2249	0.24531458950982896	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTAT	1434	0.1564166835736304	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATG	1253	0.13667371305283044	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGGGGTTCGTATGC	1091	0.11900320905078852	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1043	0.11376750416129461	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1011	0.11027703423496535	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACTT	20	7.0325396E-4	45.0	9
CCGTGCG	20	7.0325396E-4	45.0	1
CTAGCGG	20	7.0325396E-4	45.0	2
CGTTTTT	31265	0.0	44.41708	1
CACCGGT	235	0.0	43.085106	16
GATACCT	3795	0.0	42.450592	5
TGATACC	3820	0.0	42.349476	4
CCGATGA	1235	0.0	42.085022	18
CGATGAA	1240	0.0	41.91532	19
TACGGCT	3915	0.0	41.666668	7
ACGGCTG	3910	0.0	41.662407	8
ATACCTG	3885	0.0	41.58301	6
CGGCTGT	3935	0.0	41.512074	9
GAATCTG	4000	0.0	41.175	1
AATCTGT	4035	0.0	40.92937	2
TACCTGT	3995	0.0	40.719646	7
CGCTTTT	1025	0.0	40.609756	1
CCGGTGA	145	0.0	40.344826	18
GCGACTA	90	0.0	40.0	11
GAATGAC	710	0.0	39.929577	1