SRR2933474.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933474.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	798595
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26731	3.347253614159868	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTC	23400	2.9301460690337406	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCG	22687	2.8408642678704474	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGC	19351	2.4231306231569194	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCT	5574	0.6979758200339345	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTGAGTGT	4579	0.5733820021412606	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTC	4227	0.5293045911882744	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGC	4212	0.5274262924260733	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCT	3844	0.48134536279340595	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTA	3618	0.45304566144290914	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTT	2545	0.3186846899867893	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGT	1597	0.1999762082156788	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTAT	926	0.11595364358654887	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTC	60	0.0	45.000004	17
CGGGTAC	20	7.031992E-4	45.0	6
CCGTCCG	20	7.031992E-4	45.0	1
GTTCGCG	20	7.031992E-4	45.0	1
CCGTTCG	20	7.031992E-4	45.0	1
CGTTTTT	24925	0.0	44.440323	1
CGATGAA	685	0.0	43.029198	19
ACCCGTC	110	0.0	42.954544	17
CACCCGT	105	0.0	42.857143	16
CCGATGA	705	0.0	42.76596	18
CACCGGT	200	0.0	42.75	16
ACGGCTG	2485	0.0	42.73642	8
GATACCT	2675	0.0	42.476635	5
CGGCTGT	2535	0.0	42.426033	9
TACGGCT	2515	0.0	42.22664	7
GCGACCT	235	0.0	42.12766	11
CGCTTTT	625	0.0	42.120003	1
TGATCCG	75	0.0	42.0	4
TGATACC	2725	0.0	41.77982	4
CCACCGG	230	0.0	41.08696	15