SRR2933473.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933473.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	515711
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26093	5.059616723319844	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCG	10577	2.0509548952804963	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGC	7683	1.489787885075168	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTC	6641	1.287736736272835	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTGAGTGT	2249	0.43609696128257885	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCT	2028	0.39324350265943525	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGC	1816	0.35213520750963234	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTC	1268	0.2458741426884437	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTA	1147	0.2224113893246411	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCT	871	0.16889304280886	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAGTGAGTGTCGTATGCCG	839	0.1626880171258709	No Hit
GAATCTTTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTC	813	0.15764643375844223	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTT	775	0.15027796575989266	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGT	538	0.10432199429525452	No Hit
GAATGCTGCCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTT	535	0.10374027313747429	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCC	523	0.10141338850635337	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	516	0.10005603913819949	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTG	90	0.0	45.000004	1
ATCCGTC	30	2.163164E-6	45.000004	6
CACCCGT	30	2.163164E-6	45.000004	16
TGGCGAT	50	2.1827873E-11	45.0	6
CGACCGG	20	7.0296664E-4	45.0	2
CCGCTTG	20	7.0296664E-4	45.0	1
CGTTCGG	20	7.0296664E-4	45.0	2
CCCGTTG	25	3.887804E-5	45.0	1
CGGTGTA	25	3.887804E-5	45.0	19
ACCCGTC	20	7.0296664E-4	45.0	17
TGCACGG	25	3.887804E-5	45.0	2
CGTTTTT	16710	0.0	44.394073	1
CGATGAA	165	0.0	43.636368	19
CCGATGA	195	0.0	42.69231	18
TGATCCG	95	0.0	42.63158	4
ACGGCTG	985	0.0	42.48731	8
CGGCTGT	935	0.0	42.1123	9
GATACCT	1400	0.0	41.625	5
CCGGGAG	125	0.0	41.399998	5
CGACCAC	930	0.0	41.370968	12