SRR2933468.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933468.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	907373
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTC	30884	3.4036719188250033	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCG	28705	3.163528119086638	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27967	3.0821944228007667	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGC	22048	2.429871728605546	No Hit
GAACTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCT	7787	0.8581917249025484	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTC	6050	0.6667599763272657	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCACCTCTT	5259	0.5795852422322463	No Hit
GCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	4964	0.5470738053700077	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCT	4871	0.5368244371388613	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCACCTCTTCGTA	4065	0.4479965791355925	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTT	2638	0.2907293913307978	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCACCTCTTCGT	1856	0.2045465315807281	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATG	1117	0.12310262703430673	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTAT	1063	0.11715138096460881	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAAT	20	7.032502E-4	45.0	20
TCGATAT	20	7.032502E-4	45.0	42
TGCGAGG	25	3.8901548E-5	45.0	2
CGACTAT	20	7.032502E-4	45.0	19
CGTTTTT	24210	0.0	44.34944	1
CCGATGA	815	0.0	43.067486	18
ACCCGTC	115	0.0	43.04348	17
ACGGCTG	2745	0.0	42.62295	8
GATACCT	3425	0.0	42.569344	5
TACGGCT	2765	0.0	42.314648	7
TGATACC	3440	0.0	42.1875	4
CGGCTGT	2790	0.0	41.85484	9
CGATGAA	840	0.0	41.51786	19
ATACCTG	3545	0.0	41.191822	6
GAATCTG	3855	0.0	41.031128	1
CGGGTAC	55	6.002665E-11	40.909092	6
TACCTGT	3620	0.0	40.587013	7
CGACGAA	50	1.0804797E-9	40.5	19
GACGAAT	50	1.0804797E-9	40.5	20
GATGAAT	865	0.0	40.317917	20