SRR2933464.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933464.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	408814
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGC	14272	3.4910741804341336	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCG	14091	3.4467997671312625	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTC	12285	3.005034074175542	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10651	2.6053413043584612	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGCAGAGT	2915	0.71303820319265	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCT	2728	0.6672961297802913	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTC	2608	0.6379429275905424	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTA	2391	0.5848625536307465	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	2390	0.5846179436124986	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCT	2315	0.5662721922439056	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGT	941	0.23017802717128083	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTT	771	0.18859432406913657	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTAT	648	0.15850729182464396	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATG	578	0.14138459054729044	No Hit
GAATGATACGGCGACCACCCGTCTCTTATACACATCTGACGCTAGCAGAGT	460	0.11252060839403738	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTT	427	0.10444847779185644	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTAGG	65	0.0	45.000004	31
CGCCGGT	65	0.0	45.000004	28
ATAGGCC	20	7.027948E-4	45.0	29
CGTGAAC	20	7.027948E-4	45.0	33
CCAATCC	20	7.027948E-4	45.0	12
TACGAAT	20	7.027948E-4	45.0	12
CTACCGA	20	7.027948E-4	45.0	15
AGCTACG	20	7.027948E-4	45.0	9
CGATCCA	20	7.027948E-4	45.0	34
CACCCGT	80	0.0	45.0	16
CGGGTAT	60	0.0	44.999996	6
CGATTAA	30	2.162058E-6	44.999996	19
CACCGTT	30	2.162058E-6	44.999996	16
CGTTTTT	7750	0.0	44.216125	1
TACGGCT	1675	0.0	43.25373	7
ACGGCTG	1690	0.0	42.736687	8
GATACCT	1620	0.0	42.5	5
CCGATGA	365	0.0	41.91781	18
TGATACC	1650	0.0	41.863636	4
ATACCTG	1665	0.0	41.62162	6