##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933461.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 195806 Sequences flagged as poor quality 0 Sequence length 51 %GC 33 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.011240717853386 31.0 25.0 31.0 16.0 33.0 2 27.78906672931371 31.0 26.0 33.0 16.0 34.0 3 27.900100099077658 31.0 26.0 33.0 16.0 34.0 4 31.625123847073123 35.0 28.0 37.0 19.0 37.0 5 33.71501894732541 35.0 33.0 37.0 30.0 37.0 6 32.03451886050478 35.0 32.0 37.0 17.0 37.0 7 32.718164918337536 35.0 32.0 36.0 28.0 37.0 8 32.44070661777474 35.0 32.0 37.0 23.0 37.0 9 33.473785277264234 35.0 32.0 38.0 27.0 39.0 10 32.55702583169055 35.0 28.0 39.0 17.0 39.0 11 33.20493243312258 37.0 31.0 39.0 17.0 39.0 12 33.865458668273696 37.0 31.0 39.0 25.0 39.0 13 34.00035238961012 37.0 32.0 39.0 27.0 39.0 14 34.11324474224487 37.0 32.0 40.0 23.0 41.0 15 34.48200259440467 37.0 32.0 40.0 25.0 41.0 16 34.66368752745064 37.0 32.0 40.0 26.0 41.0 17 32.63830526133009 36.0 29.0 40.0 18.0 41.0 18 33.300016342706556 36.0 30.0 39.0 24.0 39.0 19 32.96811640092745 36.0 31.0 37.0 23.0 39.0 20 32.20163835633229 34.0 30.0 35.0 24.0 39.0 21 32.72638734257377 35.0 31.0 37.0 24.0 39.0 22 32.7635159290318 34.0 30.0 37.0 25.0 39.0 23 33.640766881505165 35.0 32.0 38.0 27.0 39.0 24 32.23608061040009 35.0 31.0 37.0 21.0 39.0 25 31.425890932862117 34.0 30.0 37.0 18.0 39.0 26 30.356919604097932 33.0 25.0 36.0 18.0 39.0 27 32.315000561780536 34.0 30.0 37.0 22.0 39.0 28 32.20587724584538 35.0 31.0 37.0 21.0 39.0 29 32.31911688099446 35.0 31.0 37.0 21.0 40.0 30 31.3836195009346 34.0 29.0 37.0 18.0 39.0 31 31.705187787912525 35.0 30.0 37.0 21.0 39.0 32 31.661946007783214 35.0 30.0 37.0 18.0 39.0 33 31.314586887020827 35.0 30.0 37.0 15.0 40.0 34 30.308351123050365 35.0 27.0 37.0 10.0 39.0 35 29.833718067883517 35.0 25.0 37.0 8.0 40.0 36 28.970332880504174 34.0 22.0 37.0 7.0 40.0 37 28.864187001419772 34.0 22.0 37.0 7.0 40.0 38 28.670413572617797 34.0 21.0 37.0 7.0 40.0 39 28.369161312727904 34.0 21.0 37.0 7.0 39.0 40 28.17805889502875 33.0 20.0 37.0 7.0 39.0 41 27.401065340183653 33.0 18.0 37.0 7.0 39.0 42 27.96117075064094 33.0 18.0 37.0 7.0 40.0 43 27.769756800098055 33.0 18.0 37.0 7.0 40.0 44 27.70730723266907 33.0 18.0 37.0 7.0 40.0 45 27.904303238920157 34.0 18.0 38.0 7.0 40.0 46 27.6573496215642 34.0 17.0 38.0 7.0 40.0 47 27.57034513753409 33.0 17.0 37.0 7.0 40.0 48 27.431707914977068 33.0 17.0 37.0 7.0 40.0 49 27.43264762060407 33.0 17.0 37.0 7.0 40.0 50 27.464648682879993 33.0 17.0 37.0 7.0 40.0 51 25.898813110936334 31.0 15.0 35.0 7.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 2.0 10 9.0 11 7.0 12 10.0 13 26.0 14 36.0 15 81.0 16 221.0 17 422.0 18 662.0 19 1139.0 20 1702.0 21 2540.0 22 3359.0 23 4838.0 24 6591.0 25 9304.0 26 11682.0 27 12235.0 28 11737.0 29 11798.0 30 12738.0 31 14247.0 32 16056.0 33 17314.0 34 18859.0 35 19549.0 36 11967.0 37 5485.0 38 1158.0 39 29.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.366372838421704 2.031091999223721 26.77190688742939 43.83062827492518 2 44.68606682124143 18.22262852006578 25.958346526664144 11.13295813202864 3 9.772427811200883 17.963698763061398 61.69678150822753 10.56709191751019 4 9.860269858942013 2.142937397219697 75.84701183824805 12.149780905590227 5 22.016689989070816 2.5188196480189573 61.79432703798658 13.670163324923648 6 10.34697608857747 15.59911340816931 63.530228900033705 10.523681603219513 7 39.59480301931503 1.0648294740712745 56.26691725483387 3.073450251779823 8 38.99063358630481 13.189074900666986 42.799505633126664 5.020785879901536 9 35.65059293382225 2.3936958009458342 43.1401489229135 18.81556234231842 10 23.584057689754147 15.471946722776625 47.807523773530946 13.136471813938286 11 20.31806992635568 14.277397015413214 54.24757157594762 11.156961482283485 12 15.732919318100569 12.371939572842509 55.117820700080685 16.77732040897623 13 14.464827431232955 14.719160802018324 62.08900646558328 8.72700530116544 14 12.210555345597172 18.723634617938163 52.04845612493999 17.017353911524673 15 7.636129638519759 14.852456002369694 63.82235477973096 13.68905957937959 16 9.235672042736178 14.778403113285599 51.92537511618644 24.060549727791795 17 9.555376239747506 16.529115553149545 59.17489760272924 14.740610604373716 18 9.434338069313505 14.515387679642094 57.88075952728722 18.16951472375719 19 9.838820056586622 17.95042031398425 54.21948254905365 17.991277080375472 20 11.875529861189136 16.171618847226334 61.78360213680888 10.169249154775645 21 13.443918981032246 22.239870075482877 52.652625557950216 11.663585385534663 22 9.994075768873273 14.275354177093655 57.05902781324372 18.67154224078935 23 10.72541188727618 21.953362001164418 52.99633310521639 14.324893006343013 24 12.810128392388384 14.55675515561321 53.12605333850853 19.507063113489885 25 9.087055554988101 23.45893384268102 51.3579767729283 16.09603382940257 26 10.150352900319705 14.672686230248308 58.041633044952654 17.135327824479333 27 12.714625700948897 18.550504070355352 52.19962616058752 16.53524406810823 28 8.229063460772396 18.20628581350929 59.32708905753654 14.237561668181772 29 14.580247796288162 14.446952595936793 54.81037353298673 16.16242607478831 30 14.058813315220167 20.86912556305731 53.546367322758236 11.525693798964282 31 13.593556887940103 18.388098423950236 48.76612565498504 19.252219033124625 32 15.984188431406595 23.416034237970234 47.07210197848891 13.527675352134255 33 14.119587755227112 18.338559594700875 45.41791364922423 22.123939000847777 34 14.485255814428566 19.444756544743267 48.34938663779455 17.720601003033615 35 15.368272678058895 19.372235784398846 43.134020407954814 22.12547112958745 36 14.273822048353981 24.835296160485377 44.08291880739099 16.80796298376965 37 16.009213200821222 25.02272657630512 43.39754655117821 15.570513671695455 38 18.372777136553527 26.517573516644028 38.53661276978234 16.573036577020112 39 14.775849565386148 24.965527103357406 41.025300552587765 19.233322778668683 40 18.543354136236886 19.396239134653687 40.62694708027333 21.43345964883609 41 14.152273168340091 25.817390682614423 38.17911606385913 21.851220085186355 42 13.534825286252719 21.438056035055105 42.94965424961442 22.07746442907776 43 16.766084798218646 23.83277325516072 39.60603863007262 19.795103316548012 44 19.581116002573975 20.000919277243803 40.4548379518503 19.96312676833192 45 14.449506143836247 21.36298172681123 39.92982850372307 24.25768362562945 46 19.779782029151303 24.41600359539544 38.12600226755053 17.67821210790272 47 15.489821558072785 18.51730794766248 48.180341766850866 17.812528727413866 48 17.85083194590564 21.54939072347119 37.626528298417824 22.973249032205345 49 14.539901739476829 17.800782407076394 44.93427167706812 22.72504417637866 50 18.229778454184242 18.15112917888114 40.836338008028356 22.782754358906267 51 16.976497145133447 17.556663227888826 39.58152457023789 25.885315056739834 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 31.0 1 153.0 2 275.0 3 11653.0 4 23031.0 5 15176.5 6 7322.0 7 7161.0 8 7000.0 9 6974.5 10 6949.0 11 6510.0 12 6071.0 13 5635.5 14 5200.0 15 4668.5 16 4137.0 17 3796.5 18 3456.0 19 3109.5 20 2763.0 21 2668.0 22 2573.0 23 2485.0 24 2397.0 25 2336.5 26 2297.0 27 2318.0 28 2286.5 29 2255.0 30 2392.5 31 2530.0 32 2545.5 33 2561.0 34 2557.0 35 2553.0 36 2679.5 37 2806.0 38 3281.5 39 3757.0 40 4225.0 41 4693.0 42 5244.5 43 5796.0 44 6788.0 45 7780.0 46 18049.0 47 28318.0 48 22931.0 49 17544.0 50 15559.5 51 13575.0 52 10509.0 53 7443.0 54 6326.5 55 5210.0 56 4395.5 57 3581.0 58 3137.0 59 2693.0 60 2311.0 61 1929.0 62 1753.5 63 1578.0 64 1385.0 65 1192.0 66 983.5 67 775.0 68 670.0 69 565.0 70 473.5 71 382.0 72 287.5 73 193.0 74 170.0 75 107.5 76 68.0 77 62.0 78 56.0 79 36.0 80 16.0 81 12.0 82 8.0 83 5.5 84 3.0 85 1.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 195806.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.47048609337814 #Duplication Level Percentage of deduplicated Percentage of total 1 84.99978020045718 39.49981103745544 2 6.299454897133814 5.8547746238623946 3 2.358449094425884 3.2879482753337483 4 1.3781431334622825 2.561719252729743 5 1.0220678740988218 2.3747995464898928 6 0.7220414981536838 2.013217163927561 7 0.6198347107438017 2.016281421406903 8 0.4582820467733427 1.7037271585140394 9 0.35827325479163 1.498421907398139 >10 1.6594865482679795 12.465910135542323 >50 0.061543871988746265 1.967764011317324 >100 0.05055389484789871 4.560636548420375 >500 0.0054949885704237734 1.8227224906284791 >1k 0.0032969931422542637 3.374258194335209 >5k 0.0021979954281695093 6.27202435063277 >10k+ 0.0010989977140847546 8.725983882005659 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17086 8.725983882005659 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCG 6725 3.4345219247622647 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC 5556 2.8375024258705044 No Hit GAATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTC 3020 1.5423429312687047 No Hit GCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC 1829 0.9340878216193579 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAAGCCAT 1758 0.8978274414471468 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTA 809 0.41316405013125235 No Hit GAACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCT 780 0.39835347231443363 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTC 737 0.37639296037915076 No Hit CTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGCT 645 0.3294076790292432 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCT 598 0.30540432877439916 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCC 498 0.2543333707853692 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCTGAAGCCATCGTATGCCG 488 0.2492262749864662 No Hit TCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC 463 0.2364585354892087 No Hit CCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC 381 0.19458034993820414 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGT 372 0.18998396371919143 No Hit GAATCTTTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTC 269 0.1373808769904906 No Hit GAATGACTCTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCT 254 0.12972023329213608 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTAT 250 0.12767739497257488 No Hit GAATGCTACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC 242 0.1235917183334525 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 233 0.1189953321144398 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC 224 0.11439894589542711 No Hit GAATGCTACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCG 223 0.11388823631553681 No Hit GAATGATACGGCTGCCTCCTATACACATCTGACGCTGAAGCCATCGTATGC 222 0.11337752673564652 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 210 0.1072490117769629 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATG 209 0.10673830219707262 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 207 0.10571688303729201 No Hit GAATCTGTCTCTTATCCACATCTGACGCTGAAGCCATCGTATGCCGTCTTC 203 0.10367404471773081 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTT 202 0.10316333513784053 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTGAAGCCA 198 0.10112049681827932 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4014177297937755 0.0 2 0.0 0.0 0.0 2.035688385442734 0.0 3 0.0 0.0 0.0 2.407484959602872 0.0 4 0.0 0.0 0.0 3.397750835010163 0.0 5 0.0 0.0 0.0 5.7817431539380815 0.0 6 0.0 0.0 0.0 6.261299449455072 0.0 7 0.0 0.0 0.0 6.948714543987416 0.0 8 0.0 0.0 0.0 7.812324443581913 0.0 9 0.0 0.0 0.0 8.124878706474776 0.0 10 0.0 0.0 0.0 12.910738179626774 0.0 11 0.0 0.0 0.0 14.086391632534243 0.0 12 0.0 0.0 0.0 18.24152477452172 0.0 13 0.0 0.0 0.0 18.668477983310012 0.0 14 0.0 0.0 0.0 18.911575743337792 0.0 15 0.0 0.0 0.0 19.61992993064564 0.0 16 0.0 0.0 0.0 20.120425318938132 0.0 17 0.0 0.0 0.0 20.66075605446207 0.0 18 0.0 0.0 0.0 21.13571596376005 0.0 19 0.0 0.0 0.0 22.645884191495664 0.0 20 0.0 0.0 0.0 23.159147319285417 0.0 21 0.0 0.0 0.0 23.668324770436044 0.0 22 0.0 0.0 0.0 24.541127442468564 0.0 23 0.0 0.0 0.0 25.0395799924415 0.0 24 0.0 0.0 0.0 25.377669734328876 0.0 25 0.0 0.0 0.0 25.69533109302064 0.0 26 0.0 0.0 0.0 25.939960981788097 0.0 27 0.0 0.0 0.0 26.21676557408864 0.0 28 0.0 0.0 0.0 26.45884191495664 0.0 29 0.0 0.0 0.0 26.749946375494112 0.0 30 0.0 0.0 0.0 27.05330786594895 0.0 31 0.0 0.0 0.0 27.29027711101805 0.0 32 0.0 0.0 0.0 27.552271125501772 0.0 33 0.0 0.0 0.0 27.800475981328457 0.0 34 0.0 0.0 0.0 28.03744522639756 0.0 35 0.0 0.0 0.0 28.306589174999743 0.0 36 0.0 0.0 0.0 28.543047710488953 0.0 37 0.0 0.0 0.0 28.756524314883098 0.0 38 0.0 0.0 0.0 29.012389814408138 0.0 39 0.0 0.0 0.0 29.294301502507583 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTGGC 20 7.018941E-4 45.0 3 CCAGGGT 20 7.018941E-4 45.0 13 GTGGGCC 25 3.8789192E-5 45.0 5 GGGTACC 25 3.8789192E-5 45.0 7 GACCGAT 20 7.018941E-4 45.0 9 GATCAAT 20 7.018941E-4 45.0 9 GTCTAAT 25 3.8789192E-5 45.0 21 GGATATC 20 7.018941E-4 45.0 8 GGATAAT 25 3.8789192E-5 45.0 8 CAGGGTG 20 7.018941E-4 45.0 14 CTGCGCG 20 7.018941E-4 45.0 1 CGGGGCG 20 7.018941E-4 45.0 6 CCTCCTA 25 3.8789192E-5 45.0 15 GAGAAAT 25 3.8789192E-5 45.0 9 CGAGGGA 20 7.018941E-4 45.0 4 GTCAAGT 25 3.8789192E-5 45.0 18 CGGGATA 20 7.018941E-4 45.0 6 AGCGATA 20 7.018941E-4 45.0 31 CGGTGTC 50 2.1827873E-11 45.0 19 CCAAGGT 20 7.018941E-4 45.0 13 >>END_MODULE