SRR2933460.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933460.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	713577
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCG	29953	4.197584843681901	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTC	27758	3.889979637796622	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23711	3.3228369187908244	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGC	23144	3.243378079730709	No Hit
GAACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCT	6878	0.9638763581225291	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTC	6060	0.8492426185261016	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTTCCTAT	5480	0.7679619718684879	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCT	5020	0.7034980107262426	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTA	4990	0.6992938393474005	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGC	4922	0.6897643842220251	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGTTCCTATCGT	1945	0.27257044439492867	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTT	1748	0.24496305234053228	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTAT	1324	0.18554409685289747	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATG	1238	0.17349213890021678	No Hit
CTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGCT	773	0.10832748252816445	TruSeq Adapter, Index 16 (95% over 23bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	767	0.10748664825239602	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACCG	50	2.1827873E-11	45.000004	27
CAGTAGC	30	2.164339E-6	45.000004	27
ACCGGTC	80	0.0	45.0	17
ACTAGAC	20	7.031486E-4	45.0	30
TACGATA	20	7.031486E-4	45.0	12
CGTTTTT	20225	0.0	44.39926	1
CGATGAA	865	0.0	43.699425	19
ACCGGTG	165	0.0	43.636364	17
GATACCT	3375	0.0	43.4	5
CACCGGT	260	0.0	43.26923	16
CCGATGA	885	0.0	43.220337	18
TGATACC	3405	0.0	42.687225	4
ACGGCTG	2740	0.0	42.61861	8
CGGCTGT	2730	0.0	42.28022	9
TACGGCT	2770	0.0	42.238266	7
AATGATC	670	0.0	41.97761	2
GAATCTG	3265	0.0	41.554363	1
CGGTGAA	130	0.0	41.53846	19
ATACCTG	3545	0.0	41.445698	6
ACCCGTC	125	0.0	41.4	17