##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933460.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 713577 Sequences flagged as poor quality 0 Sequence length 51 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.979754112029955 31.0 28.0 31.0 25.0 34.0 2 27.73281930331275 31.0 25.0 33.0 16.0 34.0 3 27.701423952846014 31.0 25.0 33.0 16.0 34.0 4 32.74262343096821 35.0 32.0 37.0 28.0 37.0 5 34.08347662550783 35.0 33.0 37.0 30.0 37.0 6 33.14592538716915 35.0 32.0 37.0 28.0 37.0 7 33.6338152715124 35.0 33.0 37.0 29.0 37.0 8 33.141477373850336 35.0 32.0 37.0 27.0 37.0 9 34.59138537256666 37.0 34.0 39.0 28.0 39.0 10 34.60732618904477 37.0 32.0 39.0 28.0 39.0 11 34.995441276834875 37.0 34.0 39.0 28.0 39.0 12 35.12688609638483 37.0 34.0 39.0 30.0 39.0 13 35.17152598808538 37.0 34.0 39.0 29.0 39.0 14 35.96421689600422 38.0 34.0 40.0 29.0 41.0 15 36.1413260236807 38.0 34.0 40.0 27.0 41.0 16 36.236846198798446 38.0 34.0 40.0 30.0 41.0 17 35.35440464028409 37.0 33.0 40.0 27.0 41.0 18 35.18410346746042 37.0 33.0 39.0 27.0 40.0 19 34.57144498771681 37.0 33.0 38.0 27.0 40.0 20 33.34550581086554 35.0 32.0 37.0 25.0 39.0 21 33.96988692180381 35.0 33.0 38.0 27.0 40.0 22 34.50437864449106 35.0 33.0 38.0 28.0 40.0 23 34.65795422217925 35.0 33.0 39.0 28.0 40.0 24 34.24802509049479 35.0 33.0 38.0 27.0 40.0 25 33.26423497394114 35.0 32.0 38.0 24.0 40.0 26 33.281197404064315 35.0 32.0 38.0 24.0 40.0 27 34.03006543092056 35.0 33.0 38.0 25.0 40.0 28 33.53000026626419 35.0 33.0 38.0 24.0 40.0 29 33.51746482860294 35.0 33.0 39.0 23.0 40.0 30 32.866767006223576 35.0 32.0 38.0 21.0 40.0 31 32.75097431671705 35.0 31.0 38.0 21.0 40.0 32 32.19444572905237 35.0 31.0 38.0 16.0 40.0 33 31.28444442575924 35.0 30.0 39.0 12.0 40.0 34 30.762790841072512 35.0 25.0 39.0 8.0 40.0 35 30.22166213316853 35.0 23.0 39.0 7.0 40.0 36 29.579533813449704 35.0 21.0 39.0 7.0 40.0 37 29.51347086579304 35.0 21.0 39.0 7.0 40.0 38 29.163622145893154 35.0 20.0 39.0 7.0 40.0 39 29.02385306701309 35.0 18.0 39.0 7.0 40.0 40 28.87404722966127 35.0 19.0 39.0 7.0 40.0 41 28.27234762331185 34.0 18.0 38.0 7.0 40.0 42 28.59751505443701 35.0 18.0 39.0 7.0 40.0 43 28.60826371926225 35.0 18.0 39.0 7.0 40.0 44 28.71759039318812 35.0 18.0 39.0 7.0 40.0 45 28.698339492444404 35.0 18.0 39.0 7.0 40.0 46 28.49168625109834 35.0 18.0 39.0 7.0 40.0 47 28.31533247287959 35.0 18.0 39.0 7.0 40.0 48 28.177018037296605 34.0 18.0 38.0 7.0 40.0 49 28.365711058512257 35.0 18.0 39.0 7.0 40.0 50 28.27753136662196 34.0 18.0 39.0 7.0 40.0 51 27.08869960775081 33.0 15.0 37.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 11.0 9 30.0 10 32.0 11 53.0 12 67.0 13 88.0 14 146.0 15 203.0 16 433.0 17 872.0 18 1809.0 19 3329.0 20 5304.0 21 7952.0 22 11330.0 23 15971.0 24 22987.0 25 32422.0 26 40303.0 27 39623.0 28 34797.0 29 31774.0 30 32454.0 31 36672.0 32 42516.0 33 49599.0 34 56746.0 35 64857.0 36 67675.0 37 63453.0 38 43924.0 39 6143.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.115276977817395 2.2284911088782287 27.2304180207602 37.42581389254418 2 38.72784576857158 23.505101761968223 26.49566900278456 11.271383466675635 3 9.580465738105348 23.670185558110756 54.87368567092269 11.875663032861205 4 8.986976878458806 2.4024036649163296 75.23364682437915 13.376972632245716 5 24.615563562166383 2.771529911978665 56.87375013488383 15.739156390971122 6 11.357989397079784 19.466434596406554 60.68665329740168 8.48892270911198 7 44.42337687453492 1.0199319765070902 51.887462740531156 2.669228408426841 8 41.88461791789814 15.1673890834486 38.700238376517184 4.247754622136084 9 39.57050185193749 2.360922507311755 36.85446700215954 21.214108638591213 10 27.01516444616348 14.16357309722707 44.68655800285043 14.13470445375902 11 23.196095165623333 14.424652139853162 48.67996025656657 13.699292437956942 12 16.165879785923593 12.634095549604318 51.78151762178433 19.418507042687754 13 15.626764876110077 14.762247101574182 59.77687061102025 9.834117411295487 14 14.068979241203122 22.369414933497016 47.74915671329093 15.812449112008936 15 9.806089602103206 14.9357392404744 61.358900300878524 13.899270856543863 16 10.857693002997575 17.794295499995094 47.779146469126665 23.568865027880666 17 12.16084599139266 18.473829733861937 54.33457076110917 15.030753513636231 18 12.177662676908028 17.261907264387723 52.22954215172294 18.330887906981307 19 12.107312875835403 20.355476703985694 48.06194706387678 19.475263356302122 20 14.866510551769466 18.174632870734342 55.86713136774307 11.091725209753116 21 14.219768854657591 25.038082785740013 48.963741824638404 11.77840653496399 22 12.105491068237907 14.30048894513136 52.99442106458028 20.599598922050458 23 13.577932024154366 23.23883757464156 50.85463797179561 12.32859242940846 24 15.93198771821401 17.364909463169358 47.28375494165311 19.41934787696352 25 10.627164272391067 28.757373065555647 46.027128116517204 14.58833454553608 26 12.387871245850132 15.49825737096347 52.463714497524435 19.650156885661954 27 17.644626998908315 19.05330468891234 45.769832828132074 17.53223548404727 28 10.164285003580552 18.86663947969175 53.49121398251345 17.47786153421425 29 17.0495966097562 14.208417591934719 47.840807649349685 20.9011781489594 30 16.074228849864834 21.581693356147973 48.9078263452998 13.436251448687386 31 15.391051000802996 14.990113190307422 48.88764632268136 20.731189486208216 32 17.57609900543319 20.27447633542 47.404554799271835 14.744869859874967 33 14.212061207129715 17.112238763300947 40.9182190569483 27.757480972621035 34 16.42317507430873 18.54193731019918 41.27122931372508 23.763658301767013 35 18.128947541750925 20.333755151861677 42.33474453352616 19.202552772861235 36 14.278066697777536 23.968541586962587 39.660611258490675 22.092780456769205 37 17.612535157383157 20.79537316925854 45.13430225469711 16.457789418661196 38 15.839355808833524 22.08997767584998 38.2550166274978 23.815649887818694 39 17.99455419667394 21.71930989928207 39.35426730401905 20.931868600024945 40 15.747284455636883 21.036412328312153 42.77436072070708 20.44194249534388 41 15.617375560030663 28.955950093682954 34.31710943598238 21.109564910304005 42 15.377457513344742 21.471544066022307 46.30950829412944 16.841490126503516 43 17.99161127670875 24.74715412632414 34.11320712410854 23.14802747285857 44 19.669776352096548 21.65064176676098 36.08510363983144 22.594478241311027 45 15.393293225538379 20.564424021514146 38.72097895531947 25.32130379762801 46 22.163550674979714 25.286269036137654 34.69170110583721 17.858479183045418 47 13.863815677915628 20.511451462140737 45.299946607023486 20.324786252920145 48 18.65713160597945 23.65925471252577 33.0502524604913 24.63336122100348 49 15.291692417216362 20.26774966121386 42.98765234866034 21.452905572909444 50 17.292877993545194 21.181035823744317 37.68843446467585 23.837651718034632 51 17.607630290774505 20.705123623659393 34.30898137131662 27.37826471424948 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 39.0 1 962.0 2 1885.0 3 23194.5 4 44504.0 5 33809.5 6 23115.0 7 22188.5 8 21262.0 9 21111.0 10 20960.0 11 20259.5 12 19559.0 13 18641.0 14 17723.0 15 16699.5 16 15676.0 17 14852.0 18 14028.0 19 13201.0 20 12374.0 21 11701.0 22 11028.0 23 10460.0 24 9892.0 25 9550.5 26 9383.0 27 9557.0 28 9620.0 29 9683.0 30 10373.0 31 11063.0 32 11707.0 33 12351.0 34 13284.5 35 14218.0 36 15143.5 37 16069.0 38 17309.5 39 18550.0 40 19543.0 41 20536.0 42 21569.0 43 22602.0 44 25741.0 45 28880.0 46 86014.5 47 143149.0 48 95012.0 49 46875.0 50 42226.0 51 37577.0 52 30814.0 53 24051.0 54 21905.0 55 19759.0 56 17647.5 57 15536.0 58 14018.5 59 12501.0 60 11254.0 61 10007.0 62 8361.0 63 6715.0 64 5609.5 65 4504.0 66 3666.5 67 2829.0 68 2339.5 69 1850.0 70 1586.0 71 1322.0 72 1149.5 73 977.0 74 764.0 75 442.5 76 334.0 77 233.5 78 133.0 79 104.0 80 75.0 81 59.0 82 43.0 83 29.0 84 15.0 85 8.5 86 2.0 87 1.5 88 1.0 89 3.0 90 5.0 91 3.5 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 713577.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.407681063877696 #Duplication Level Percentage of deduplicated Percentage of total 1 85.91934616454186 39.87317614020962 2 6.087611948192514 5.650239074647387 3 2.242417578539206 3.121961993906412 4 1.2688378451894986 2.355352881653283 5 0.789823423838073 1.8326936775128595 6 0.569555313573843 1.5859044804343054 7 0.4385860655346973 1.4247633573876637 8 0.3598070201015671 1.3358247546734208 9 0.3063087816406356 1.2793572220899214 >10 1.9058144760611577 14.542671543062907 >50 0.06731926733841105 2.1777618556435665 >100 0.037502055756743105 3.4485269955914277 >500 0.0027665450968088934 0.8051413238652242 >1k 0.0018443633978725959 2.3062933704693624 >5k 0.0012295755985817305 3.3435333715012625 >10k+ 0.0012295755985817305 14.916797957351354 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCG 29953 4.197584843681901 No Hit GAATCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTC 27758 3.889979637796622 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23711 3.3228369187908244 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGC 23144 3.243378079730709 No Hit GAACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCT 6878 0.9638763581225291 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTC 6060 0.8492426185261016 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTTCCTAT 5480 0.7679619718684879 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCT 5020 0.7034980107262426 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTA 4990 0.6992938393474005 No Hit GCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGC 4922 0.6897643842220251 TruSeq Adapter, Index 13 (95% over 21bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGTTCCTATCGT 1945 0.27257044439492867 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTT 1748 0.24496305234053228 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTAT 1324 0.18554409685289747 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATG 1238 0.17349213890021678 No Hit CTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGCT 773 0.10832748252816445 TruSeq Adapter, Index 16 (95% over 23bp) CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 767 0.10748664825239602 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.116175269102003 0.0 2 0.0 0.0 0.0 0.9209938100583399 0.0 3 0.0 0.0 0.0 1.0698214768693497 0.0 4 0.0 0.0 0.0 2.246849323899173 0.0 5 0.0 0.0 0.0 6.752039373466354 0.0 6 0.0 0.0 0.0 7.139383696503671 0.0 7 0.0 0.0 0.0 8.043420682000681 0.0 8 0.0 0.0 0.0 9.131320095799051 0.0 9 0.0 0.0 0.0 9.280428040701985 0.0 10 0.0 0.0 0.0 14.232801785932002 0.0 11 0.0 0.0 0.0 14.501868754177895 0.0 12 0.0 0.0 0.0 18.48027612997616 0.0 13 0.0 0.0 0.0 18.81268594699661 0.0 14 0.0 0.0 0.0 19.08259374951827 0.0 15 0.0 0.0 0.0 19.995039077772965 0.0 16 0.0 0.0 0.0 20.44180235629792 0.0 17 0.0 0.0 0.0 20.668827610755393 0.0 18 0.0 0.0 0.0 20.862079355136167 0.0 19 0.0 0.0 0.0 21.96917781823125 0.0 20 0.0 0.0 0.0 22.227313940892152 0.0 21 0.0 0.0 0.0 22.439484456477718 0.0 22 0.0 0.0 0.0 22.829911838526186 0.0 23 0.0 0.0 0.0 23.056516675845774 0.0 24 0.0 0.0 0.0 23.245424109801746 0.0 25 0.0 0.0 0.0 23.398315808945636 0.0 26 0.0 0.0 0.0 23.592128109510256 0.0 27 0.0 0.0 0.0 23.855869794009617 0.0 28 0.0 0.0 0.0 24.034687216656366 0.0 29 0.0 0.0 0.0 24.241392309449434 0.0 30 0.0 0.0 0.0 24.43268210718675 0.0 31 0.0 0.0 0.0 24.636164001922708 0.0 32 0.0 0.0 0.0 24.860386475460952 0.0 33 0.0 0.0 0.0 25.077321718609205 0.0 34 0.0 0.0 0.0 25.328310749926075 0.0 35 0.0 0.0 0.0 25.540901682649526 0.0 36 0.0 0.0 0.0 25.76386290477412 0.0 37 0.0 0.0 0.0 26.01877582937791 0.0 38 0.0 0.0 0.0 26.280695706279772 0.0 39 0.0 0.0 0.0 26.551864760215086 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATACCG 50 2.1827873E-11 45.000004 27 CAGTAGC 30 2.164339E-6 45.000004 27 ACCGGTC 80 0.0 45.0 17 ACTAGAC 20 7.031486E-4 45.0 30 TACGATA 20 7.031486E-4 45.0 12 CGTTTTT 20225 0.0 44.39926 1 CGATGAA 865 0.0 43.699425 19 ACCGGTG 165 0.0 43.636364 17 GATACCT 3375 0.0 43.4 5 CACCGGT 260 0.0 43.26923 16 CCGATGA 885 0.0 43.220337 18 TGATACC 3405 0.0 42.687225 4 ACGGCTG 2740 0.0 42.61861 8 CGGCTGT 2730 0.0 42.28022 9 TACGGCT 2770 0.0 42.238266 7 AATGATC 670 0.0 41.97761 2 GAATCTG 3265 0.0 41.554363 1 CGGTGAA 130 0.0 41.53846 19 ATACCTG 3545 0.0 41.445698 6 ACCCGTC 125 0.0 41.4 17 >>END_MODULE