SRR2933458.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933458.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	585834
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	20123	3.434932079735898	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19566	3.3398539518020467	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	16648	2.84176063526528	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGC	16614	2.8359569434344882	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTCCAATT	4217	0.7198284838367183	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTC	3914	0.6681073478152514	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCT	3909	0.667253863722488	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTA	3523	0.6013648917611474	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCT	3406	0.5813933639904819	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	3020	0.5155043920291414	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGT	1499	0.255874531010491	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTAT	932	0.15908943489111252	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTT	829	0.14150766258018485	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATG	772	0.13177794392268116	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	617	0.10531993704701331	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATG	20	7.0304517E-4	45.0	40
ATATGCG	20	7.0304517E-4	45.0	23
TGCGCGT	20	7.0304517E-4	45.0	2
CACCGCT	35	1.2105556E-7	45.0	16
TACGTTC	25	3.888455E-5	45.0	15
GTACGGC	20	7.0304517E-4	45.0	6
TACCGCG	20	7.0304517E-4	45.0	29
CTAGCGG	35	1.2105556E-7	45.0	2
CGTTTTT	13735	0.0	44.361122	1
GCGACTG	460	0.0	42.55435	11
TACGGCT	2105	0.0	42.54157	7
GATACCT	2340	0.0	42.5	5
TGATACC	2345	0.0	42.313435	4
ACGGCTG	2120	0.0	42.134434	8
CGTGCGG	65	0.0	41.53846	2
CACGTGA	65	0.0	41.53846	43
ATACCTG	2405	0.0	41.351353	6
CGGCTGT	2190	0.0	41.30137	9
CCGATGA	620	0.0	41.008068	18
CGACCAC	1960	0.0	40.982143	12