SRR2933456.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933456.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1190617
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38089	3.1990976107346025	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTC	31694	2.6619811408706577	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCG	28170	2.366000149502317	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGC	20731	1.7411980510945164	No Hit
GAACTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCT	7723	0.6486552770538301	RNA PCR Primer, Index 14 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTC	6073	0.5100716687230235	No Hit
GCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGC	5044	0.42364589116399315	RNA PCR Primer, Index 14 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCACCATTT	4795	0.4027323648158896	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCT	4714	0.3959291694978318	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCACCATTTCGTA	4189	0.35183438502893877	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTT	2879	0.2418073990208438	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCACCATTTCGT	1904	0.15991708500718535	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGGCG	20	7.033388E-4	45.0	3
CGTTTTT	40300	0.0	44.408188	1
ACGGCTG	2885	0.0	42.81629	8
GATACCT	3365	0.0	42.59287	5
TGATACC	3380	0.0	42.337276	4
CGGCTGT	2950	0.0	42.330505	9
TACGGCT	2915	0.0	42.22127	7
CGATGAA	860	0.0	41.33721	19
ATACCTG	3505	0.0	40.891582	6
CCGATGA	865	0.0	40.83815	18
CGACGAA	50	1.0822987E-9	40.500004	19
CGCTTTT	1250	0.0	40.5	1
GAATCTG	3670	0.0	40.401905	1
TACCTGT	3590	0.0	40.236767	7
GAATGAT	11025	0.0	39.938774	1
AATCTGT	3700	0.0	39.89189	2
ATGATAC	10535	0.0	39.85287	3
CGACCAC	2435	0.0	39.733063	12
CGATGCG	85	0.0	39.705883	10
AATGATC	745	0.0	39.56376	2