SRR2933454.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933454.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	406125
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCG	14908	3.6707910126192678	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13133	3.233733456448138	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGC	12634	3.1108648815020006	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTC	10850	2.671591258848877	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACCATTGT	3061	0.7537088334872268	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTC	2600	0.6401969836872884	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACCATTGTCGTA	2432	0.5988304093567252	No Hit
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	2411	0.5936595875654048	TruSeq Adapter, Index 27 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCT	2348	0.5781471221914436	No Hit
GAACTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCT	2317	0.5705140043090182	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGACCATTGTCGT	915	0.2253000923361034	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTT	644	0.15857186826715913	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTAT	602	0.14823022468451832	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATG	570	0.14035087719298245	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	438	0.10784856879039705	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGC	20	7.027892E-4	45.000004	5
GCGAACC	30	2.1620217E-6	45.000004	33
TCGGGCT	35	1.2093369E-7	45.000004	5
CGCGCGA	20	7.027892E-4	45.000004	41
TTATACG	20	7.027892E-4	45.000004	26
ATATCAC	30	2.1620217E-6	45.000004	30
CGAGGGA	20	7.027892E-4	45.000004	4
ACTACCG	20	7.027892E-4	45.000004	14
CTACCGA	20	7.027892E-4	45.000004	15
CTTCTCG	35	1.2093369E-7	45.000004	1
ACATCGA	20	7.027892E-4	45.000004	21
CACGTCT	20	7.027892E-4	45.000004	40
CACCGAA	20	7.027892E-4	45.000004	16
GCGACTA	25	3.886335E-5	45.0	11
CGTTTTT	11015	0.0	44.26464	1
GCGACTG	335	0.0	43.656715	11
GGCGACT	365	0.0	43.150684	10
CGATGAA	445	0.0	42.977528	19
TTGATAC	110	0.0	42.954544	3
ACGGCTG	1485	0.0	42.878784	8