SRR2933448.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933448.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1313380
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38854	2.9583212779241346	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTC	30470	2.3199683259985684	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCG	29147	2.219235864715467	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGC	28963	2.2052262102361846	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCT	7465	0.5683808189556716	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCAGGTTT	6227	0.47412020892658635	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTC	5812	0.442522346921683	No Hit
GCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC	5419	0.41259955230017203	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTA	5288	0.40262528742633513	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCT	4964	0.3779561132345551	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTT	2424	0.18456196987924287	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGT	2336	0.177861700345673	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTAT	1361	0.10362575949077951	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTCGCG	55	1.8189894E-12	45.0	1
CGTTTTT	48890	0.0	44.599613	1
CGGCTGT	3620	0.0	43.632595	9
GATACCT	3355	0.0	42.921013	5
ACGGCTG	3640	0.0	42.89835	8
CGATGAA	1020	0.0	42.794117	19
TGATACC	3380	0.0	42.60355	4
TACGGCT	3680	0.0	42.432068	7
CCGATGA	1040	0.0	42.403843	18
ATACCTG	3520	0.0	40.97301	6
GAATCTG	3485	0.0	40.803444	1
CGCTTTT	1225	0.0	40.77551	1
ATGATAC	12225	0.0	40.23313	3
AATCTGT	3555	0.0	40.126583	2
GAATGAT	12780	0.0	40.088028	1
TACCTGT	3630	0.0	39.917355	7
ATACGGC	8790	0.0	39.85495	6
TCTTGCG	260	0.0	39.80769	1
GCGACTG	775	0.0	39.774193	11
AATGATA	12125	0.0	39.674225	2