SRR2933445.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933445.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	197712
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14961	7.5670672493323625	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCG	7437	3.761531925224569	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGC	5100	2.5795095897062392	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC	3830	1.9371611232499797	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGGACAAT	1906	0.9640284858784494	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	1901	0.9614995549081492	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCT	1302	0.6585336246661811	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTC	1008	0.5098324836125273	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGGACAATCGTA	903	0.4567249332362223	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCT	727	0.3677065630816541	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGTGGACAATCGTATGCCG	630	0.31864530225782955	No Hit
CTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT	552	0.2791939791211459	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	403	0.20383183620619894	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTGGACAATCGT	383	0.193716112324998	No Hit
GAATCTTTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC	339	0.1714615197863559	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCC	333	0.16842680262199564	No Hit
TCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	307	0.1552763615764344	No Hit
GAATGACTCTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCT	290	0.14667799627741362	No Hit
GAATGCTACCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCG	275	0.1390912033665129	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTT	265	0.13403334142591244	No Hit
GAATCTGTCTCTTATCCACATCTGACGCGTGGACAATCGTATGCCGTCTTC	259	0.13099862426155215	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGTGGACAA	259	0.13099862426155215	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	249	0.1259407623209517	No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGC	247	0.12492918993283159	No Hit
GAATGCTACGGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGC	245	0.1239176175447115	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	236	0.11936554179817108	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTAT	222	0.1122845350813304	No Hit
GAATCTGTCTCTTATCCCCATCTGACGCGTGGACAATCGTATGCCGTCTTC	218	0.11026139030509025	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTT	211	0.1067208869466699	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	204	0.10318038358824957	No Hit
GAATGATACGGCTGCCTCCTATACACATCTGACGCGTGGACAATCGTATGC	204	0.10318038358824957	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGGAT	40	6.7666406E-9	45.000004	5
CATATCA	20	7.019105E-4	45.000004	29
AGCTTAT	20	7.019105E-4	45.000004	24
TCGGGCG	20	7.019105E-4	45.000004	5
ATCCGTC	40	6.7666406E-9	45.000004	6
TTATACG	20	7.019105E-4	45.000004	26
CCCCGTC	20	7.019105E-4	45.000004	17
ATATCAC	20	7.019105E-4	45.000004	30
AATGACT	130	0.0	45.000004	2
CCCCCGT	20	7.019105E-4	45.000004	16
CGGTGTC	20	7.019105E-4	45.000004	19
CCCCATC	40	6.7666406E-9	45.000004	16
CAAGCTT	20	7.019105E-4	45.000004	22
GGTGAAT	20	7.019105E-4	45.000004	20
ACATAGT	20	7.019105E-4	45.000004	35
GATTATT	20	7.019105E-4	45.000004	9
CCTCTTG	20	7.019105E-4	45.000004	1
TGATCCG	90	0.0	45.0	4
TCTTGCG	35	1.2051169E-7	45.0	1
ACCGGTC	25	3.879056E-5	45.0	17

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content