SRR2933440.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933440.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	562250
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCG	20030	3.5624722098710535	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGC	16754	2.9798132503334815	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTC	15059	2.678345931525122	RNA PCR Primer, Index 36 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12164	2.16345042240996	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGACAATCT	3808	0.6772787905735883	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTC	3550	0.6313917296576256	No Hit
GCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	3238	0.5759004001778568	RNA PCR Primer, Index 15 (96% over 25bp)
GAACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCT	3093	0.5501111605157848	RNA PCR Primer, Index 15 (95% over 23bp)
GAATGACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCT	3084	0.5485104490884838	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGACAATCTCGTA	2815	0.5006669630947087	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGACAATCTCGT	1167	0.20755891507336596	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTT	1018	0.18105824811027124	RNA PCR Primer, Index 36 (95% over 21bp)
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTAT	882	0.15686971987550022	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATG	720	0.12805691418408183	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGAAAT	20	7.0302084E-4	45.0	45
TCGAGCG	20	7.0302084E-4	45.0	32
CGTTTTT	10675	0.0	44.367683	1
GATACCT	2300	0.0	42.847824	5
TGATACC	2325	0.0	42.48387	4
CCGATGA	470	0.0	42.12766	18
TACCTGT	2380	0.0	41.97479	7
CGATGAA	490	0.0	41.785713	19
ACGGCTG	2105	0.0	41.686462	8
CGGCTGT	2125	0.0	41.611763	9
TACGGCT	2110	0.0	41.587677	7
ATACCTG	2400	0.0	41.53125	6
CGACCAC	1715	0.0	40.53936	12
CGGGCAC	50	1.0786607E-9	40.5	6
GAATGAT	7610	0.0	40.239815	1
ATGATAC	7335	0.0	40.092022	3
CGACCCT	45	1.9252184E-8	40.000004	12
GACCGAT	175	0.0	39.857143	9
AATGATA	7270	0.0	39.80055	2
ATACGGC	4885	0.0	39.749233	6