##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933440.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 562250 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.255279679857715 31.0 28.0 31.0 25.0 34.0 2 28.35192530013339 31.0 26.0 33.0 16.0 34.0 3 28.387959092930192 31.0 25.0 33.0 16.0 34.0 4 32.935302801245 35.0 32.0 37.0 28.0 37.0 5 34.14264828812806 35.0 33.0 37.0 30.0 37.0 6 33.323941307247665 35.0 32.0 37.0 28.0 37.0 7 33.36174833259226 35.0 32.0 36.0 28.0 37.0 8 33.26290795909293 35.0 32.0 37.0 28.0 37.0 9 34.48987638950645 37.0 34.0 39.0 28.0 39.0 10 34.33073365940418 37.0 32.0 39.0 27.0 39.0 11 34.65547354379724 37.0 33.0 39.0 27.0 39.0 12 34.74936949755447 37.0 33.0 39.0 27.0 39.0 13 34.86962738995109 37.0 34.0 39.0 27.0 39.0 14 35.66538372610049 38.0 34.0 40.0 27.0 41.0 15 35.915628279235214 38.0 34.0 40.0 27.0 41.0 16 35.923062694530906 38.0 34.0 40.0 30.0 41.0 17 35.158473988439304 37.0 33.0 40.0 27.0 41.0 18 35.05513739439751 37.0 33.0 39.0 27.0 40.0 19 34.530875944864384 37.0 33.0 38.0 27.0 40.0 20 33.88263405958204 35.0 32.0 38.0 26.0 40.0 21 34.47218319253001 35.0 33.0 39.0 27.0 40.0 22 35.07239306358382 36.0 33.0 39.0 30.0 40.0 23 35.34651133837261 36.0 34.0 39.0 30.0 40.0 24 34.92070253445976 36.0 33.0 39.0 28.0 40.0 25 33.844992441084926 35.0 33.0 39.0 24.0 40.0 26 34.06732414406403 35.0 33.0 39.0 25.0 40.0 27 34.66344330813695 36.0 33.0 39.0 27.0 40.0 28 34.38486260560249 36.0 33.0 39.0 25.0 40.0 29 34.44218408181414 36.0 33.0 39.0 25.0 40.0 30 33.75020542463317 35.0 33.0 39.0 23.0 40.0 31 33.76213250333482 35.0 33.0 39.0 23.0 40.0 32 33.39593063583815 36.0 33.0 39.0 21.0 40.0 33 32.90596709648733 36.0 32.0 39.0 16.0 41.0 34 32.49247843485994 36.0 31.0 40.0 12.0 41.0 35 32.34045175633615 37.0 31.0 40.0 10.0 41.0 36 31.910164517563363 36.0 30.0 40.0 9.0 41.0 37 31.859550022232103 37.0 30.0 40.0 8.0 41.0 38 31.436636727434415 36.0 29.0 40.0 8.0 41.0 39 31.152008892841263 36.0 28.0 39.0 8.0 40.0 40 30.934433081369498 35.0 26.0 39.0 8.0 40.0 41 30.440037349933302 35.0 24.0 39.0 8.0 40.0 42 30.867461093819475 36.0 27.0 39.0 8.0 40.0 43 30.799921742996887 36.0 26.0 39.0 8.0 40.0 44 30.94761049355269 36.0 27.0 39.0 7.0 40.0 45 30.999142730102268 36.0 27.0 39.0 7.0 40.0 46 30.769598932859047 35.0 26.0 39.0 7.0 40.0 47 30.564366385060026 35.0 26.0 39.0 7.0 40.0 48 30.426141396176078 35.0 26.0 39.0 7.0 40.0 49 30.724455313472653 35.0 27.0 39.0 7.0 40.0 50 30.63211027123166 35.0 27.0 39.0 7.0 40.0 51 29.358509559804357 34.0 24.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 33.0 10 35.0 11 37.0 12 47.0 13 59.0 14 83.0 15 124.0 16 258.0 17 505.0 18 1070.0 19 1956.0 20 2991.0 21 4550.0 22 6161.0 23 8984.0 24 12936.0 25 18351.0 26 23166.0 27 24482.0 28 22981.0 29 22834.0 30 24408.0 31 28195.0 32 33377.0 33 40183.0 34 45753.0 35 53059.0 36 59868.0 37 64693.0 38 52821.0 39 8245.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.318363717207646 2.748421520675856 31.787816807469987 33.14539795464651 2 31.193952867941306 20.091596265006668 33.956602934637615 14.757847932414405 3 13.16674077367719 20.19421965317919 52.666251667407735 13.972787905735885 4 11.932592263228102 3.1767007558915075 68.66945309026234 16.221253890618055 5 25.094886616273897 3.6681191640729214 53.142374388617164 18.094619831036017 6 14.663939528679412 18.219831036016007 56.37883503779457 10.737394397510004 7 55.95660293463761 1.3751889728768343 39.91996442863495 2.7482436638506003 8 54.49799911071588 13.764873277012004 28.11133837261005 3.625789239662072 9 50.9693196976434 3.327523343708315 27.24268563806136 18.460471320586926 10 31.453268119164076 19.27558915073366 34.856024899955536 14.415117830146732 11 25.960693641618498 17.461093819475323 41.65691418408181 14.921298354824367 12 19.421253890618054 15.66118274788795 44.02667852378835 20.89088483770565 13 18.93926189417519 16.496042685638063 51.951978657180966 12.61271676300578 14 16.927879057358826 23.064117385504666 42.00675855935971 18.001244997776787 15 12.60738105824811 17.71044908848377 53.55073365940418 16.13143619386394 16 14.885015562472208 18.965762561138284 41.58221431747443 24.567007558915073 17 15.560871498443754 19.68216985326812 47.991107158737215 16.76585148955091 18 15.185771453979546 17.980435749221876 46.22249888839484 20.611293908403734 19 15.384259670964873 21.141129390840373 42.893552690084476 20.58105824811027 20 17.931702979101825 19.530280124499775 49.02676745220098 13.511249444197421 21 17.88012449977768 25.67309915518008 42.52129835482437 13.925477990217875 22 15.790484659848822 16.190662516674077 46.425255669186306 21.593597154290798 23 16.024544241885284 24.758381502890174 44.180880391285015 15.036193863939529 24 17.269008448199198 19.222943530457982 41.89275233437083 21.61529568697199 25 14.064739884393063 29.092218763895065 40.12770120053357 16.7153401511783 26 16.14370831480658 17.610493552690084 45.31133837261005 20.934459759893286 27 18.81760782570031 21.11747443308137 40.4361049355269 19.628812805691418 28 13.687683414851046 21.382481102712315 46.73348154735438 18.19635393508226 29 22.63245887060916 17.403823921742998 40.76033792796799 19.203379279679858 30 18.517207647843488 24.64099599822143 42.45406847487772 14.387727879057358 31 19.297109826589594 21.701378390395732 37.760960426856386 21.240551356158292 32 21.24730991551801 23.491329479768787 37.488128056914185 17.773232547799022 33 17.357936860827035 23.354201867496666 35.27416629613162 24.013694975544688 34 23.310626945309025 24.441618497109825 36.10564695420187 16.14210760337928 35 20.147976878612717 22.478257003112496 37.12850155624722 20.245264562027568 36 20.810137839039573 27.19502000889284 31.806669630947088 20.1881725211205 37 20.562027567807913 23.30600266785238 35.70475767007559 20.427212094264117 38 18.440373499333038 30.37332147621165 31.709737661182746 19.476567363272565 39 20.246153846153845 26.574655402401063 31.894886616273897 21.284304135171187 40 18.69613161405069 25.642152067585595 37.8150289017341 17.846687416629614 41 17.965317919075144 28.597243219208536 30.64686527345487 22.790573588261452 42 17.502356602934636 22.669275233437084 41.294619831036016 18.53374833259226 43 20.82596709648733 22.564339706536238 31.57901289461983 25.0306803023566 44 22.0188528234771 22.87896843041352 34.236193863939526 20.86598488216985 45 17.74299688750556 22.995286794130728 34.65042240995998 24.611293908403738 46 23.352245442418855 25.643041351711872 30.96540684748777 20.039306358381502 47 16.246153846153845 23.041707425522453 41.58648288128057 19.12565584704313 48 20.418674966651846 26.270875944864386 30.811916407292127 22.49853268119164 49 17.496487327701203 21.542374388617162 39.37483325922632 21.586305024455314 50 19.970653623832817 21.46536238328146 34.684037349933305 23.879946642952422 51 19.945931525122276 21.86162738995109 32.47398843930635 25.718452645620278 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 66.0 1 667.5 2 1269.0 3 13690.0 4 26111.0 5 19797.5 6 13484.0 7 12984.5 8 12485.0 9 12162.0 10 11839.0 11 11240.5 12 10642.0 13 10080.5 14 9519.0 15 8833.5 16 8148.0 17 7666.5 18 7185.0 19 6608.5 20 6032.0 21 5773.0 22 5514.0 23 5449.0 24 5384.0 25 5375.5 26 5911.0 27 6455.0 28 7069.0 29 7683.0 30 8681.5 31 9680.0 32 10663.0 33 11646.0 34 12722.0 35 13798.0 36 14564.5 37 15331.0 38 16157.0 39 16983.0 40 18589.0 41 20195.0 42 21315.0 43 22435.0 44 24760.5 45 27086.0 46 62209.5 47 97333.0 48 68348.5 49 39364.0 50 36442.5 51 33521.0 52 28942.5 53 24364.0 54 22578.5 55 20793.0 56 19689.5 57 18586.0 58 16780.0 59 14974.0 60 13270.0 61 11566.0 62 10364.5 63 9163.0 64 7774.5 65 6386.0 66 5313.5 67 4241.0 68 3545.0 69 2849.0 70 2435.5 71 2022.0 72 1580.0 73 1138.0 74 964.0 75 607.0 76 424.0 77 297.5 78 171.0 79 136.5 80 102.0 81 86.5 82 71.0 83 52.0 84 33.0 85 22.0 86 11.0 87 9.0 88 7.0 89 4.5 90 2.0 91 1.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 562250.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.22516570127406 #Duplication Level Percentage of deduplicated Percentage of total 1 81.85661533206701 33.74552530809913 2 5.259807731146742 4.336728905467336 3 2.3240805534995723 2.8743181776338576 4 1.5523112505380707 2.559771540935357 5 1.282942471731985 2.64447579911766 6 1.1622998789384957 2.8749603062286155 7 1.0538862862549268 3.0412645746811786 8 0.9173433894962564 3.0254106589561247 9 0.7580638669006634 2.812617767261557 >10 3.7400820694128796 22.415467391412943 >50 0.05850943765044504 1.6547820286232842 >100 0.027944806041389963 2.2855180481967086 >500 8.732751887934364E-4 0.2883673240301746 >1k 0.0034931007551737454 3.9192395418907564 >5k 0.0 0.0 >10k+ 0.0017465503775868727 11.521552627465285 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCG 20030 3.5624722098710535 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGC 16754 2.9798132503334815 No Hit GAATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTC 15059 2.678345931525122 RNA PCR Primer, Index 36 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12164 2.16345042240996 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGACAATCT 3808 0.6772787905735883 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTC 3550 0.6313917296576256 No Hit GCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC 3238 0.5759004001778568 RNA PCR Primer, Index 15 (96% over 25bp) GAACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCT 3093 0.5501111605157848 RNA PCR Primer, Index 15 (95% over 23bp) GAATGACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCT 3084 0.5485104490884838 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGACAATCTCGTA 2815 0.5006669630947087 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGACAATCTCGT 1167 0.20755891507336596 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTT 1018 0.18105824811027124 RNA PCR Primer, Index 36 (95% over 21bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTAT 882 0.15686971987550022 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATG 720 0.12805691418408183 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07309915518008003 0.0 2 0.0 0.0 0.0 0.7674522009782125 0.0 3 0.0 0.0 0.0 0.8754112939084038 0.0 4 0.0 0.0 0.0 1.5686971987550022 0.0 5 0.0 0.0 0.0 4.7514450867052025 0.0 6 0.0 0.0 0.0 5.0262338817252115 0.0 7 0.0 0.0 0.0 5.713828368163628 0.0 8 0.0 0.0 0.0 6.511516229435305 0.0 9 0.0 0.0 0.0 6.6342374388617165 0.0 10 0.0 0.0 0.0 10.889461983103601 0.0 11 0.0 0.0 0.0 11.076745220097822 0.0 12 0.0 0.0 0.0 14.762472209871055 0.0 13 0.0 0.0 0.0 15.00578034682081 0.0 14 0.0 0.0 0.0 15.231302801244997 0.0 15 0.0 0.0 0.0 15.905202312138728 0.0 16 0.0 0.0 0.0 16.237261004891064 0.0 17 0.0 0.0 0.0 16.39626500666963 0.0 18 0.0 0.0 0.0 16.525033348154736 0.0 19 0.0 0.0 0.0 17.47229879946643 0.0 20 0.0 0.0 0.0 17.671320586927525 0.0 21 0.0 0.0 0.0 17.80168963983993 0.0 22 0.0 0.0 0.0 18.072387727879057 0.0 23 0.0 0.0 0.0 18.21556247220987 0.0 24 0.0 0.0 0.0 18.33952867941307 0.0 25 0.0 0.0 0.0 18.436816362827923 0.0 26 0.0 0.0 0.0 18.565762561138282 0.0 27 0.0 0.0 0.0 18.76620720320142 0.0 28 0.0 0.0 0.0 18.871320586927524 0.0 29 0.0 0.0 0.0 18.999911071587373 0.0 30 0.0 0.0 0.0 19.137394397510004 0.0 31 0.0 0.0 0.0 19.26313917296576 0.0 32 0.0 0.0 0.0 19.392263228101378 0.0 33 0.0 0.0 0.0 19.51783014673188 0.0 34 0.0 0.0 0.0 19.70155624722099 0.0 35 0.0 0.0 0.0 19.856113828368162 0.0 36 0.0 0.0 0.0 19.999822143174743 0.0 37 0.0 0.0 0.0 20.14939973321476 0.0 38 0.0 0.0 0.0 20.3121387283237 0.0 39 7.114273010226768E-4 0.0 0.0 20.53179190751445 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGAAAT 20 7.0302084E-4 45.0 45 TCGAGCG 20 7.0302084E-4 45.0 32 CGTTTTT 10675 0.0 44.367683 1 GATACCT 2300 0.0 42.847824 5 TGATACC 2325 0.0 42.48387 4 CCGATGA 470 0.0 42.12766 18 TACCTGT 2380 0.0 41.97479 7 CGATGAA 490 0.0 41.785713 19 ACGGCTG 2105 0.0 41.686462 8 CGGCTGT 2125 0.0 41.611763 9 TACGGCT 2110 0.0 41.587677 7 ATACCTG 2400 0.0 41.53125 6 CGACCAC 1715 0.0 40.53936 12 CGGGCAC 50 1.0786607E-9 40.5 6 GAATGAT 7610 0.0 40.239815 1 ATGATAC 7335 0.0 40.092022 3 CGACCCT 45 1.9252184E-8 40.000004 12 GACCGAT 175 0.0 39.857143 9 AATGATA 7270 0.0 39.80055 2 ATACGGC 4885 0.0 39.749233 6 >>END_MODULE