SRR2933439.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933439.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	383671
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17603	4.5880454868885066	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCG	9170	2.3900685743775263	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGC	6510	1.6967662398252668	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTC	4151	1.0819165378670788	RNA PCR Primer, Index 36 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGACAATCT	1692	0.4410028383693321	No Hit
GCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	1566	0.4081622014694882	RNA PCR Primer, Index 15 (96% over 25bp)
GAATGATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTC	1111	0.2895710126644964	No Hit
GAACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCT	1107	0.28852845276291406	RNA PCR Primer, Index 15 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGACAATCTCGTA	868	0.22623549864336895	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGGACAATCTCGTATGCCG	709	0.1847937425554707	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCT	687	0.1790596630967678	No Hit
GAATCTTTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTC	447	0.1165060690018271	RNA PCR Primer, Index 15 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTC	40	6.7939254E-9	45.0	17
ACGTTTG	20	7.0274057E-4	45.0	1
GCGCGAC	20	7.0274057E-4	45.0	9
GGATACG	20	7.0274057E-4	45.0	8
CACTCGA	20	7.0274057E-4	45.0	33
CGCTATG	20	7.0274057E-4	45.0	24
CTACGGG	25	3.8859303E-5	45.0	3
TCGCTAT	20	7.0274057E-4	45.0	23
GATTACG	20	7.0274057E-4	45.0	9
CGTTTTT	8925	0.0	44.319324	1
GATACCT	1135	0.0	43.414097	5
TGATACC	1155	0.0	42.857143	4
ACGGCTG	925	0.0	42.567566	8
TACGGCT	935	0.0	42.112297	7
CGATGAA	155	0.0	42.09677	19
ACCGGTG	70	0.0	41.785713	17
ATGATAC	3250	0.0	41.746155	3
GCGACTG	135	0.0	41.666664	11
ATACCTG	1175	0.0	41.553192	6
GAATGAT	3435	0.0	41.397377	1