##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933439.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 383671 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.223597822092366 31.0 26.0 31.0 16.0 33.0 2 28.43693685475316 31.0 28.0 33.0 16.0 34.0 3 28.682433647578264 31.0 28.0 33.0 16.0 34.0 4 31.69711810379205 35.0 28.0 35.0 19.0 37.0 5 33.4765645566123 35.0 33.0 37.0 28.0 37.0 6 32.2476027638263 35.0 32.0 37.0 17.0 37.0 7 31.70314149362344 33.0 30.0 35.0 25.0 37.0 8 32.52779595017606 35.0 32.0 35.0 25.0 37.0 9 32.54103124812665 34.0 31.0 37.0 25.0 39.0 10 31.218327681789866 35.0 27.0 38.0 15.0 39.0 11 32.00927878312408 35.0 27.0 39.0 17.0 39.0 12 32.89774311845305 35.0 31.0 39.0 23.0 39.0 13 33.03060955871046 35.0 31.0 39.0 24.0 39.0 14 33.094104063116575 36.0 31.0 39.0 18.0 41.0 15 33.795752089681 36.0 32.0 39.0 25.0 41.0 16 34.01558627052866 36.0 32.0 40.0 25.0 41.0 17 31.93326313429996 34.0 27.0 39.0 18.0 41.0 18 32.760075689848854 35.0 30.0 39.0 21.0 39.0 19 32.71326996306732 36.0 30.0 37.0 19.0 39.0 20 32.40805794547933 34.0 30.0 37.0 24.0 39.0 21 32.820369535357116 35.0 31.0 37.0 24.0 39.0 22 33.24831170455938 35.0 31.0 38.0 25.0 39.0 23 34.198307925279735 35.0 33.0 39.0 27.0 40.0 24 32.53015734835314 35.0 31.0 37.0 22.0 39.0 25 31.564280333931936 35.0 29.0 37.0 18.0 39.0 26 31.23977053256566 34.0 27.0 37.0 20.0 39.0 27 32.728045643272495 35.0 31.0 38.0 22.0 40.0 28 32.65267116878784 35.0 31.0 38.0 22.0 40.0 29 32.945140497978734 35.0 31.0 38.0 22.0 40.0 30 31.753755170445512 35.0 30.0 38.0 18.0 40.0 31 32.08841429245369 35.0 30.0 38.0 21.0 40.0 32 32.07047965574672 35.0 30.0 38.0 19.0 40.0 33 32.10524642206474 35.0 30.0 38.0 16.0 40.0 34 31.27478751326006 35.0 30.0 38.0 12.0 40.0 35 30.899914249448095 35.0 29.0 38.0 10.0 40.0 36 30.381592562377662 35.0 27.0 38.0 8.0 40.0 37 30.49552350842258 35.0 27.0 38.0 8.0 40.0 38 30.275405230001745 35.0 25.0 38.0 8.0 40.0 39 29.841828024531434 34.0 25.0 38.0 8.0 40.0 40 29.67699669769151 34.0 24.0 38.0 8.0 40.0 41 29.22152052148846 34.0 23.0 38.0 7.0 40.0 42 29.832108759848932 34.0 24.0 38.0 8.0 40.0 43 29.875898882115145 35.0 24.0 38.0 8.0 40.0 44 29.894221872385454 35.0 25.0 38.0 7.0 40.0 45 30.093900763935768 35.0 25.0 38.0 7.0 40.0 46 29.833740366094908 35.0 24.0 38.0 7.0 40.0 47 29.79120392211035 35.0 24.0 38.0 7.0 40.0 48 29.5589841296319 34.0 24.0 38.0 7.0 40.0 49 29.422390537726333 34.0 24.0 38.0 7.0 40.0 50 29.60672555392511 34.0 24.0 38.0 7.0 40.0 51 27.879933588934268 32.0 22.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 11.0 10 19.0 11 22.0 12 22.0 13 67.0 14 79.0 15 200.0 16 407.0 17 791.0 18 1327.0 19 2109.0 20 3062.0 21 4280.0 22 5985.0 23 8090.0 24 11212.0 25 14802.0 26 18466.0 27 19862.0 28 20303.0 29 21286.0 30 23814.0 31 27243.0 32 31273.0 33 35213.0 34 38880.0 35 40969.0 36 32233.0 37 17693.0 38 3880.0 39 69.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.736448676079245 2.7502730203742267 34.51003594225261 36.00324236129392 2 34.82045815294875 13.648933591540668 36.44554839954023 15.08505985597035 3 14.213479778247509 13.476650567804185 58.21289594470262 14.096973709245683 4 12.818013349979541 3.2527868929369173 67.29906612696816 16.630133630115385 5 21.155364882933554 3.726109088255302 57.47424225443153 17.644283774379613 6 15.106692973928181 12.843295427592913 59.89689082573351 12.1531207727454 7 56.74653544312706 1.4335198646757248 39.029533115612075 2.7904115765851474 8 57.408300340656446 9.545157178937162 29.307401393381312 3.7391410870250814 9 52.817127174063195 3.2624305720265543 29.50626969460814 14.414172559302111 10 29.054580617247588 20.26814640668698 36.67126261823281 14.006010357832622 11 23.4737574640773 18.287803873631315 44.336684294617 13.901754367674387 12 19.045744922081678 16.4698400452471 46.098349888315774 18.386065144355452 13 17.91821638852037 17.115445264301968 52.148846277148905 12.817492070028749 14 16.184699912164326 20.14460305834947 45.44336163014666 18.227335399339538 15 12.80133239155422 18.14575508704072 53.30895480763467 15.743957713770392 16 14.91017043247991 17.282776128505933 44.993757672589275 22.81329576642488 17 15.601908927179798 18.1587870858105 49.31907806427903 16.920225922730673 18 15.238837441453745 16.44742500736308 48.58589781349124 19.72783973769193 19 15.794261229021739 19.855553325635768 45.29792452387593 19.05226092146657 20 17.764699443012372 18.632109281128884 49.896916889731045 13.706274386127697 21 18.02950965801429 22.654044741458176 44.75136249547138 14.565083105056154 22 15.94543241475118 16.679655225440545 47.487560957174246 19.887351402634028 23 15.651430522504958 23.05178134391184 45.732150722884974 15.564637410698229 24 16.072364082768832 18.440278259237733 45.07194966520795 20.415407992785486 25 14.291411130890788 24.178267317571564 43.43565189967446 18.094669651863185 26 15.685053079330991 18.409783382116448 46.79764694230213 19.107516596250434 27 16.644729468737538 20.491514865600998 43.99185760716865 18.87189805849282 28 13.850408292521458 20.489951025748624 48.53350917843674 17.126131503293184 29 19.956160356138465 17.461835791602702 44.14302879289808 18.438975059360754 30 16.99893919530014 22.600352906526684 45.135806459179875 15.264901438993302 31 17.851753194794497 20.941640103109176 41.537410958868406 19.66919574322792 32 19.226107785055426 22.609214665690136 41.34010649749394 16.824571051760493 33 16.67574562580961 21.93519968931715 39.40928555976344 21.979769125109794 34 21.15797128268751 23.259250764326726 39.16298078301461 16.419797169971147 35 19.042356602401536 22.651177701728827 38.81294129605834 19.493524399811296 36 19.845127726619943 25.799447964532114 35.25390243203161 19.101521876816335 37 19.357209692679405 23.727099520161804 37.42425150715066 19.491439280008134 38 17.991716861581928 28.593247860797398 35.083183248147506 18.33185202947317 39 18.561736487772077 26.119513854317894 35.15042836179956 20.16832129611047 40 18.392320503764946 24.84759077438743 39.22006093762625 17.540027784221376 41 17.660704092829533 26.177636568831108 34.59370137435459 21.567957963984767 42 17.295808127275713 22.61651258500121 41.249403786056284 18.838275501666793 43 19.63974342600822 22.319383013050242 34.985964537324946 23.054909023616588 44 21.19889175882462 22.86959400111033 36.46822407739965 19.46329016266541 45 17.609879297627394 23.222761167771345 36.94754099215213 22.21981854244913 46 20.746160121562486 25.26226897524181 34.16677309465662 19.82479780853909 47 16.4283982891592 23.094526299876716 41.462346645954476 19.014728765009608 48 19.415332407192622 25.299540491723377 34.045836146073064 21.239290955010933 49 17.206408615715027 21.940673128800455 39.34256172606217 21.510356529422346 50 18.943574051726607 21.773863544547282 36.289425054278276 22.993137349447835 51 19.20890554667932 22.050141918466604 35.076927888738005 23.664024646116076 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 67.0 1 367.0 2 667.0 3 13695.5 4 26724.0 5 18437.5 6 10151.0 7 9804.5 8 9458.0 9 9176.0 10 8894.0 11 8432.0 12 7970.0 13 7387.0 14 6804.0 15 6275.0 16 5746.0 17 5318.0 18 4890.0 19 4437.5 20 3985.0 21 3770.5 22 3556.0 23 3568.0 24 3580.0 25 3567.5 26 3834.0 27 4113.0 28 4516.0 29 4919.0 30 5759.0 31 6599.0 32 7313.0 33 8027.0 34 8780.0 35 9533.0 36 10238.5 37 10944.0 38 11552.5 39 12161.0 40 13361.5 41 14562.0 42 15375.5 43 16189.0 44 17686.5 45 19184.0 46 31897.0 47 44610.0 48 36935.5 49 29261.0 50 27299.0 51 25337.0 52 21764.0 53 18191.0 54 16305.5 55 14420.0 56 13342.0 57 12264.0 58 11066.5 59 9869.0 60 8812.0 61 7755.0 62 7012.5 63 6270.0 64 5389.5 65 4509.0 66 3770.5 67 3032.0 68 2605.0 69 2178.0 70 1826.0 71 1474.0 72 1184.5 73 895.0 74 762.5 75 499.0 76 368.0 77 258.0 78 148.0 79 124.0 80 100.0 81 71.5 82 43.0 83 32.5 84 22.0 85 15.0 86 8.0 87 6.0 88 4.0 89 4.5 90 5.0 91 2.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 383671.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.411564753130946 #Duplication Level Percentage of deduplicated Percentage of total 1 79.57764377735542 35.34167679519608 2 6.605010029488256 5.866776612393941 3 3.112897979170043 4.147460105154025 4 2.1179491364393837 3.7624574086726184 5 1.6115881336195732 3.5786575375811562 6 1.283912792918038 3.4212345684031593 7 1.0425338389807537 3.2410391368056755 8 0.868606004535815 3.0860921452320564 9 0.7357323513406746 2.9407522466285694 >10 2.9628872379438085 18.55189445982773 >50 0.04599545075025578 1.419829952645635 >100 0.028672488779380226 2.6579365275703695 >500 0.0017920305487112642 0.6006156600877649 >1k 0.00298671758118544 2.5539430033855623 >5k 0.0011946870324741762 4.159740967392294 >10k+ 5.973435162370881E-4 4.669892873023377 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17603 4.5880454868885066 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCG 9170 2.3900685743775263 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGC 6510 1.6967662398252668 No Hit GAATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTC 4151 1.0819165378670788 RNA PCR Primer, Index 36 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGACAATCT 1692 0.4410028383693321 No Hit GCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC 1566 0.4081622014694882 RNA PCR Primer, Index 15 (96% over 25bp) GAATGATCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTC 1111 0.2895710126644964 No Hit GAACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCT 1107 0.28852845276291406 RNA PCR Primer, Index 15 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGACAATCTCGTA 868 0.22623549864336895 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCGGACAATCTCGTATGCCG 709 0.1847937425554707 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCT 687 0.1790596630967678 No Hit GAATCTTTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTC 447 0.1165060690018271 RNA PCR Primer, Index 15 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12588910811606818 0.0 2 0.0 0.0 0.0 0.8072020038001309 0.0 3 0.0 0.0 0.0 0.9901712665278325 0.0 4 0.0 0.0 0.0 1.5122331372451918 0.0 5 0.0 0.0 0.0 3.0294184340229 0.0 6 0.0 0.0 0.0 3.2947499289756066 0.0 7 0.0 0.0 0.0 3.6604278144556144 0.0 8 0.0 0.0 0.0 4.20985688258951 0.0 9 0.0 0.0 0.0 4.350602469303127 0.0 10 0.0 0.0 0.0 7.492096092746129 0.0 11 0.0 0.0 0.0 7.923194612050429 0.0 12 0.0 0.0 0.0 10.367476301310237 0.0 13 0.0 0.0 0.0 10.59058412024886 0.0 14 0.0 0.0 0.0 10.736281866494991 0.0 15 0.0 0.0 0.0 11.158257986660447 0.0 16 0.0 0.0 0.0 11.423068201662362 0.0 17 0.0 0.0 0.0 11.663638898952488 0.0 18 0.0 0.0 0.0 11.899518076685494 0.0 19 0.0 0.0 0.0 12.670491123905638 0.0 20 0.0 0.0 0.0 12.930088539399643 0.0 21 0.0 0.0 0.0 13.19359555452458 0.0 22 0.0 0.0 0.0 13.585858717494936 0.0 23 0.0 0.0 0.0 13.835291173948514 0.0 24 0.0 0.0 0.0 14.046148914043542 0.0 25 0.0 0.0 0.0 14.226251137041892 0.0 26 0.0 0.0 0.0 14.413129999400528 0.0 27 0.0 0.0 0.0 14.633631418585194 0.0 28 0.0 0.0 0.0 14.792882443551898 0.0 29 0.0 0.0 0.0 14.984192185492258 0.0 30 0.0 0.0 0.0 15.182278566792903 0.0 31 2.606399753955863E-4 0.0 0.0 15.370199989053122 0.0 32 2.606399753955863E-4 0.0 0.0 15.55395117170701 0.0 33 2.606399753955863E-4 0.0 0.0 15.723627795689536 0.0 34 2.606399753955863E-4 0.0 0.0 15.921453537014786 0.0 35 2.606399753955863E-4 0.0 0.0 16.1273591175773 0.0 36 2.606399753955863E-4 0.0 0.0 16.312413500108164 0.0 37 2.606399753955863E-4 0.0 0.0 16.50893604155644 0.0 38 2.606399753955863E-4 0.0 0.0 16.705719222980104 0.0 39 0.0013031998769779316 0.0 0.0 16.957236799236846 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGTC 40 6.7939254E-9 45.0 17 ACGTTTG 20 7.0274057E-4 45.0 1 GCGCGAC 20 7.0274057E-4 45.0 9 GGATACG 20 7.0274057E-4 45.0 8 CACTCGA 20 7.0274057E-4 45.0 33 CGCTATG 20 7.0274057E-4 45.0 24 CTACGGG 25 3.8859303E-5 45.0 3 TCGCTAT 20 7.0274057E-4 45.0 23 GATTACG 20 7.0274057E-4 45.0 9 CGTTTTT 8925 0.0 44.319324 1 GATACCT 1135 0.0 43.414097 5 TGATACC 1155 0.0 42.857143 4 ACGGCTG 925 0.0 42.567566 8 TACGGCT 935 0.0 42.112297 7 CGATGAA 155 0.0 42.09677 19 ACCGGTG 70 0.0 41.785713 17 ATGATAC 3250 0.0 41.746155 3 GCGACTG 135 0.0 41.666664 11 ATACCTG 1175 0.0 41.553192 6 GAATGAT 3435 0.0 41.397377 1 >>END_MODULE