SRR2933437.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933437.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	236619
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13489	5.700725639107595	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCG	6797	2.872550386908913	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGC	4960	2.096196839645168	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTC	3272	1.382813721636893	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTACTAGGGT	1399	0.591245842472498	No Hit
GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	1291	0.5456028467705467	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTC	912	0.3854297414831438	No Hit
GAACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCT	899	0.37993567718568666	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTA	842	0.3558463183429902	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCT	589	0.2489233747078637	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTACTAGGGTCGTATGCCG	550	0.23244118181549242	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTACTAGGGTCGT	328	0.1386194684281482	No Hit
GAATCTTTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTC	319	0.13481588545298562	No Hit
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT	304	0.12847658049438127	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGCCTCCTATACACATCTGACGCTACTAGGGTCGTATGC	276	0.11664321123831982	No Hit
GAATGACTCTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCT	261	0.1103039062797155	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTAT	247	0.10438722165168478	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTT	238	0.10058363867652217	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	25	3.881387E-5	45.0	6
ATGATCC	70	0.0	45.0	3
TCGGGAT	35	1.2064629E-7	45.0	5
CGACCCT	25	3.881387E-5	45.0	12
TACGGAT	25	3.881387E-5	45.0	29
CCCGTCT	35	1.2064629E-7	45.0	18
CGGATTT	20	7.0219213E-4	45.0	33
CGGGATG	50	2.1827873E-11	45.0	6
TAGGGCG	20	7.0219213E-4	45.0	5
TCGAGGG	20	7.0219213E-4	45.0	2
ATACGGA	25	3.881387E-5	45.0	28
CCTATGC	20	7.0219213E-4	45.0	35
AGGGCGA	25	3.881387E-5	45.0	6
CCTTGCG	20	7.0219213E-4	45.0	1
CCGTGTC	30	2.1581727E-6	44.999996	19
TTATACG	30	2.1581727E-6	44.999996	26
CTACGGC	60	0.0	44.999996	6
TAGGGAC	30	2.1581727E-6	44.999996	5
TTACGGG	30	2.1581727E-6	44.999996	3
TATACGG	30	2.1581727E-6	44.999996	27