Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933436.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 601186 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 34 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24817 | 4.1280069728836 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCG | 17494 | 2.9099147352067414 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTC | 17236 | 2.8669995641947748 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGC | 15537 | 2.584391519429927 | No Hit |
GAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCT | 4238 | 0.704939902126796 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGCTTCGT | 3482 | 0.5791884707894063 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTC | 3368 | 0.5602259533655142 | No Hit |
GCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC | 3182 | 0.5292871091475849 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCT | 2885 | 0.4798847611221818 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTA | 2678 | 0.44545282158932514 | No Hit |
GAATGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTT | 1732 | 0.2880971945454485 | No Hit |
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGT | 1157 | 0.19245291806529094 | No Hit |
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTAT | 774 | 0.12874551303589904 | No Hit |
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 754 | 0.12541875559311094 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA | 732 | 0.12175932240604405 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA | 647 | 0.10762060327419466 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTTCA | 70 | 0.0 | 45.0 | 16 |
TTATCGG | 35 | 1.2106284E-7 | 45.0 | 2 |
ACGGGCT | 20 | 7.0305984E-4 | 45.0 | 5 |
ATACGGA | 20 | 7.0305984E-4 | 45.0 | 4 |
TATACCG | 20 | 7.0305984E-4 | 45.0 | 27 |
TGCGTTG | 25 | 3.8885788E-5 | 45.0 | 1 |
CGTTTTT | 19795 | 0.0 | 44.329376 | 1 |
CGATGAA | 650 | 0.0 | 44.307693 | 19 |
GATACCT | 2040 | 0.0 | 43.566177 | 5 |
CCGATGA | 670 | 0.0 | 42.985073 | 18 |
TGATACC | 2075 | 0.0 | 42.831326 | 4 |
ATACCTG | 2100 | 0.0 | 42.321426 | 6 |
ACGGCTG | 1965 | 0.0 | 41.564884 | 8 |
GATGAAT | 710 | 0.0 | 41.514084 | 20 |
TACGGCT | 1975 | 0.0 | 41.468353 | 7 |
TACCTGT | 2175 | 0.0 | 41.06897 | 7 |
CGGCTGT | 2005 | 0.0 | 40.960102 | 9 |
ATGAATG | 660 | 0.0 | 40.90909 | 21 |
GAATCTG | 1985 | 0.0 | 40.80605 | 1 |
TTGATAC | 105 | 0.0 | 40.714287 | 3 |