SRR2933436.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933436.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	601186
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24817	4.1280069728836	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCG	17494	2.9099147352067414	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTC	17236	2.8669995641947748	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGC	15537	2.584391519429927	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCT	4238	0.704939902126796	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGCTTCGT	3482	0.5791884707894063	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTC	3368	0.5602259533655142	No Hit
GCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	3182	0.5292871091475849	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCT	2885	0.4798847611221818	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTA	2678	0.44545282158932514	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTT	1732	0.2880971945454485	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGT	1157	0.19245291806529094	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTAT	774	0.12874551303589904	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	754	0.12541875559311094	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	732	0.12175932240604405	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	647	0.10762060327419466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCA	70	0.0	45.0	16
TTATCGG	35	1.2106284E-7	45.0	2
ACGGGCT	20	7.0305984E-4	45.0	5
ATACGGA	20	7.0305984E-4	45.0	4
TATACCG	20	7.0305984E-4	45.0	27
TGCGTTG	25	3.8885788E-5	45.0	1
CGTTTTT	19795	0.0	44.329376	1
CGATGAA	650	0.0	44.307693	19
GATACCT	2040	0.0	43.566177	5
CCGATGA	670	0.0	42.985073	18
TGATACC	2075	0.0	42.831326	4
ATACCTG	2100	0.0	42.321426	6
ACGGCTG	1965	0.0	41.564884	8
GATGAAT	710	0.0	41.514084	20
TACGGCT	1975	0.0	41.468353	7
TACCTGT	2175	0.0	41.06897	7
CGGCTGT	2005	0.0	40.960102	9
ATGAATG	660	0.0	40.90909	21
GAATCTG	1985	0.0	40.80605	1
TTGATAC	105	0.0	40.714287	3