FastQCFastQC Report
Sat 14 Jan 2017
SRR2933436.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933436.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences601186
Sequences flagged as poor quality0
Sequence length51
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT248174.1280069728836No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCG174942.9099147352067414No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTC172362.8669995641947748No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGC155372.584391519429927No Hit
GAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCT42380.704939902126796No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGCTTCGT34820.5791884707894063No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTC33680.5602259533655142No Hit
GCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC31820.5292871091475849No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCT28850.4798847611221818No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTA26780.44545282158932514No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTT17320.2880971945454485No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGT11570.19245291806529094No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTAT7740.12874551303589904No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7540.12541875559311094No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA7320.12175932240604405No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA6470.10762060327419466No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTCA700.045.016
TTATCGG351.2106284E-745.02
ACGGGCT207.0305984E-445.05
ATACGGA207.0305984E-445.04
TATACCG207.0305984E-445.027
TGCGTTG253.8885788E-545.01
CGTTTTT197950.044.3293761
CGATGAA6500.044.30769319
GATACCT20400.043.5661775
CCGATGA6700.042.98507318
TGATACC20750.042.8313264
ATACCTG21000.042.3214266
ACGGCTG19650.041.5648848
GATGAAT7100.041.51408420
TACGGCT19750.041.4683537
TACCTGT21750.041.068977
CGGCTGT20050.040.9601029
ATGAATG6600.040.9090921
GAATCTG19850.040.806051
TTGATAC1050.040.7142873