##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933426.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 533658 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.283730404116493 31.0 28.0 31.0 25.0 34.0 2 28.339826255766802 31.0 26.0 33.0 16.0 34.0 3 28.32403711740478 31.0 25.0 33.0 16.0 34.0 4 33.002233640271484 35.0 32.0 37.0 28.0 37.0 5 34.21570556423777 35.0 33.0 37.0 30.0 37.0 6 33.46208620502269 35.0 32.0 37.0 28.0 37.0 7 33.65863905347619 35.0 33.0 37.0 29.0 37.0 8 33.37946962286708 35.0 33.0 37.0 28.0 37.0 9 34.71886114327903 37.0 34.0 39.0 28.0 39.0 10 34.661815244969624 37.0 33.0 39.0 28.0 39.0 11 34.892507935794086 37.0 34.0 39.0 27.0 39.0 12 34.96541230525917 37.0 34.0 39.0 27.0 39.0 13 34.99883445952277 37.0 34.0 39.0 27.0 39.0 14 35.785165780331226 38.0 34.0 40.0 27.0 41.0 15 36.06221962380401 38.0 34.0 40.0 27.0 41.0 16 36.10384928174973 38.0 34.0 40.0 30.0 41.0 17 35.32868241458012 37.0 33.0 40.0 27.0 41.0 18 35.118416663855875 37.0 33.0 39.0 27.0 40.0 19 34.43013877801888 37.0 33.0 38.0 27.0 40.0 20 33.60436646691327 35.0 32.0 37.0 26.0 40.0 21 34.13188409055987 35.0 33.0 38.0 27.0 40.0 22 34.67118828912899 35.0 33.0 39.0 29.0 40.0 23 34.95860270060601 35.0 33.0 39.0 30.0 40.0 24 34.511205678543185 35.0 33.0 38.0 27.0 40.0 25 33.580656525340196 35.0 33.0 38.0 24.0 40.0 26 33.51693406638709 35.0 32.0 38.0 24.0 40.0 27 34.25450756851767 35.0 33.0 38.0 27.0 40.0 28 33.93744308152412 35.0 33.0 39.0 25.0 40.0 29 34.009176288934114 35.0 33.0 39.0 24.0 40.0 30 33.302204782838444 35.0 33.0 39.0 21.0 40.0 31 33.19425549696622 35.0 33.0 38.0 21.0 40.0 32 32.573230420981226 35.0 31.0 38.0 18.0 40.0 33 31.863466864546208 35.0 30.0 39.0 14.0 40.0 34 31.42409745567386 35.0 30.0 39.0 10.0 40.0 35 30.967516649239776 35.0 27.0 39.0 8.0 40.0 36 30.312211191437214 35.0 24.0 39.0 7.0 40.0 37 30.296497007446717 35.0 23.0 39.0 7.0 40.0 38 29.968603487626908 35.0 23.0 39.0 7.0 40.0 39 29.703889007566644 35.0 22.0 39.0 7.0 40.0 40 29.414143515135162 35.0 22.0 39.0 7.0 40.0 41 28.96885271091223 35.0 21.0 39.0 7.0 40.0 42 29.214124026998565 35.0 21.0 39.0 7.0 40.0 43 29.085165030787508 35.0 20.0 39.0 7.0 40.0 44 29.235278024502584 35.0 20.0 39.0 7.0 40.0 45 29.343315381761354 35.0 20.0 39.0 7.0 40.0 46 29.07834418297861 35.0 20.0 39.0 7.0 40.0 47 29.016270720199078 35.0 20.0 39.0 7.0 40.0 48 28.872671261369643 35.0 20.0 38.0 7.0 40.0 49 29.077718313976366 35.0 20.0 39.0 7.0 40.0 50 28.962245483062187 35.0 20.0 39.0 7.0 40.0 51 27.674433813416083 33.0 18.0 37.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 12.0 9 26.0 10 35.0 11 44.0 12 39.0 13 67.0 14 84.0 15 147.0 16 280.0 17 566.0 18 1153.0 19 2095.0 20 3288.0 21 4865.0 22 7042.0 23 10260.0 24 14544.0 25 20675.0 26 26842.0 27 28487.0 28 26528.0 29 24673.0 30 25185.0 31 27965.0 32 32272.0 33 38045.0 34 42138.0 35 49257.0 36 52035.0 37 51611.0 38 37983.0 39 5414.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.133156441016528 2.3732427884525293 28.705088277511067 38.78851249301987 2 38.38094809784543 19.28219946107807 29.724092958411568 12.612759482664929 3 11.700939553047082 19.48626273755851 56.05668799118536 12.756109718209041 4 10.475435578591533 2.6822421850698386 71.87037390988236 14.97194832645627 5 23.02485861731671 3.2389657795816795 56.882123007619114 16.8540525954825 6 12.69577144913034 16.884409115950668 60.43645930539784 9.983360129521154 7 48.43588965217424 1.3474922141146577 47.49671137694928 2.719906756761821 8 46.64223154154909 13.178477601759928 36.39671849761458 3.782572359076412 9 43.83781373089132 2.8218447020376347 35.49764081115621 17.842700755914837 10 29.371620026308985 15.895948341447145 41.549269382263546 13.183162249980324 11 25.092662341799432 13.825895985818635 47.454549542965715 13.626892129416218 12 18.371503847033118 12.988093498083042 49.85233988809312 18.788062766790716 13 18.14158131237609 14.028460174868549 56.875564500110556 10.954394012644803 14 14.820165724115444 20.76985634994697 48.39672599305173 16.013251932885854 15 11.158269903196429 14.15438351903279 59.74687908735557 14.94046749041521 16 14.129461190500283 16.185646987396424 47.46804132984046 22.216850492262836 17 14.624534814431714 16.836438318173812 53.25939084582261 15.279636021571868 18 14.578250490014206 15.519677396384951 51.305517766059914 18.596554347540934 19 14.554452477054594 17.862001506582867 48.07610866884784 19.5074373475147 20 16.32075224207264 17.842513369986023 53.91168126403052 11.92505312391082 21 15.987392674709271 22.940534949349583 48.63995292865469 12.432119447286464 22 13.796663780923362 13.960626468637216 52.541327966600335 19.70138178383909 23 14.595302609536445 21.58479775436703 50.55335064779316 13.26654898830337 24 16.270720199078813 16.853865209553685 47.683347762049856 19.192066829317653 25 13.74101016006506 25.30909308958172 45.488496377829996 15.461400372523226 26 13.52382986856751 14.780627293135304 51.40370799275941 20.291834845537778 27 16.209819772213667 18.223468963268612 46.810316719696885 18.75639454482084 28 10.950271522210855 18.225904980343216 53.18724726322851 17.636576234217422 29 17.035629560505043 15.148465871400784 49.389496643918015 18.426407924176157 30 14.144077292947918 20.254732431632245 49.372631910324586 16.228558365095246 31 18.214287052756635 15.311304243541743 47.576163010767196 18.898245692934427 32 22.180497622072565 20.604019802944958 43.613512774098766 13.601969800883712 33 16.59546001371665 19.691262943683032 40.35374715641853 23.359529886181786 34 18.76913678798032 18.632345059944758 45.14426842659531 17.454249725479613 35 16.16953179751826 21.213211457525233 41.16437868447583 21.452878060480682 36 19.735298636954752 21.424582785229493 42.39456730715177 16.445551270663984 37 19.904508130675453 21.398161369266457 38.807438471830274 19.889892028227816 38 19.117299843720133 25.190477796641296 38.0657649655772 17.626457394061365 39 23.65972214414475 20.78690846946921 35.234738353027595 20.318631033358443 40 18.046951418324095 23.89395455516454 40.46898950264027 17.590104523871094 41 21.263805658305508 22.94877993021748 33.741459886294216 22.045954525182797 42 17.752380738225604 21.032758808075585 43.49864519973466 17.716215253964148 43 23.060461943791715 20.682534507118792 35.10731592143283 21.149687627656665 44 20.746807880702622 20.846497194832644 35.70132931577902 22.705365608685714 45 17.06336267796979 20.149983697424194 37.764823163898974 25.021830460707044 46 24.586345562139048 22.61860592364398 33.98018955960559 18.81485895461138 47 15.369206495545837 21.341008660977632 44.41327591828475 18.87650892519179 48 19.166394957069883 23.48001903841037 34.30717800538922 23.04640799913053 49 17.514587994558312 19.506875189728255 42.44328764864389 20.535249167069548 50 19.896263149807556 19.649663267485916 38.00561408242732 22.448459500279206 51 18.513729767004335 19.867967874556363 36.00901701089462 25.60928534754468 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 135.0 1 962.5 2 1790.0 3 19971.0 4 38152.0 5 27886.0 6 17620.0 7 16683.5 8 15747.0 9 15283.0 10 14819.0 11 14189.5 12 13560.0 13 12499.5 14 11439.0 15 10558.0 16 9677.0 17 8967.0 18 8257.0 19 7646.0 20 7035.0 21 6750.0 22 6465.0 23 6074.0 24 5683.0 25 5591.5 26 5799.0 27 6098.0 28 6278.0 29 6458.0 30 6994.0 31 7530.0 32 8164.0 33 8798.0 34 9594.5 35 10391.0 36 10854.5 37 11318.0 38 12040.5 39 12763.0 40 13583.5 41 14404.0 42 15607.0 43 16810.0 44 18358.5 45 19907.0 46 54112.5 47 88318.0 48 60964.5 49 33611.0 50 30388.5 51 27166.0 52 23950.0 53 20734.0 54 20008.0 55 19282.0 56 18333.5 57 17385.0 58 16253.5 59 15122.0 60 13709.0 61 12296.0 62 10860.0 63 9424.0 64 8378.5 65 7333.0 66 6012.0 67 4691.0 68 3728.5 69 2766.0 70 2328.0 71 1890.0 72 1614.5 73 1339.0 74 1146.5 75 715.0 76 476.0 77 362.0 78 248.0 79 194.0 80 140.0 81 110.5 82 81.0 83 53.5 84 26.0 85 19.5 86 13.0 87 8.5 88 4.0 89 3.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 533658.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.882152918181255 #Duplication Level Percentage of deduplicated Percentage of total 1 84.29556446555098 36.147752857361624 2 5.2378144380179865 4.492175193762899 3 2.0904058423547554 2.6892330897874834 4 1.3845729965091864 2.3749388385076546 5 0.9975129616710477 2.1387751680122866 6 0.8751136163842094 2.2516053551142163 7 0.718530899811687 2.1568506345514193 8 0.6687463691562179 2.294182725250834 9 0.5567342333832644 2.1486566277654795 >10 3.0448392851652994 20.2070638139265 >50 0.07615088919472916 2.2902265285089625 >100 0.04693019915472049 3.6194046704282647 >500 0.002213688639373608 0.6633550104110552 >1k 0.0030991640951230507 3.967219890540758 >5k 0.0 0.0 >10k+ 0.0017709509114988864 12.558559596070543 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17808 3.3369686203523603 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCG 17511 3.2813149994940582 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGC 15728 2.947205888415427 No Hit GAATCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTC 15101 2.8297149110478994 No Hit GAACTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCT 4020 0.7532914338396501 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTC 3545 0.6642831176521292 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCTGACTGT 3383 0.6339265971839643 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCTGACTGTCGTA 3123 0.5852062556918476 No Hit GAATGACTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCT 2830 0.5303021785488085 No Hit GCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC 2719 0.5095023404502509 TruSeq Adapter, Index 19 (95% over 22bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCTGACTGTCGT 1276 0.23910444516900337 No Hit GAATGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTT 840 0.1574041802053 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTAT 809 0.1515952164120092 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATG 775 0.14522409483227086 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 559 0.10474873420805084 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.621577864475001E-4 0.0 0.0 0.08694707097054669 0.0 2 5.621577864475001E-4 0.0 0.0 0.7060701797780601 0.0 3 5.621577864475001E-4 0.0 0.0 0.7999505301147927 0.0 4 5.621577864475001E-4 0.0 0.0 1.704837180366452 0.0 5 5.621577864475001E-4 0.0 0.0 5.080032530197243 0.0 6 5.621577864475001E-4 0.0 0.0 5.329255815522301 0.0 7 5.621577864475001E-4 0.0 0.0 6.000659598469432 0.0 8 5.621577864475001E-4 0.0 0.0 6.833215280198179 0.0 9 5.621577864475001E-4 0.0 0.0 6.943210820413073 0.0 10 5.621577864475001E-4 0.0 0.0 10.836340877490828 0.0 11 5.621577864475001E-4 0.0 0.0 11.058205817208774 0.0 12 5.621577864475001E-4 0.0 0.0 14.656765194188038 0.0 13 5.621577864475001E-4 0.0 0.0 14.930910808045603 0.0 14 5.621577864475001E-4 0.0 0.0 15.146966783970258 0.0 15 5.621577864475001E-4 0.0 0.0 15.916748179545701 0.0 16 5.621577864475001E-4 0.0 0.0 16.281775968878947 0.0 17 5.621577864475001E-4 0.0 0.0 16.467475424335436 0.0 18 5.621577864475001E-4 0.0 0.0 16.598270802648887 0.0 19 5.621577864475001E-4 0.0 0.0 17.48816657859528 0.0 20 5.621577864475001E-4 0.0 0.0 17.684547031994274 0.0 21 5.621577864475001E-4 0.0 0.0 17.838578265480887 0.0 22 5.621577864475001E-4 0.0 0.0 18.14888936359991 0.0 23 5.621577864475001E-4 0.0 0.0 18.301796281513628 0.0 24 5.621577864475001E-4 0.0 0.0 18.432404273898264 0.0 25 5.621577864475001E-4 0.0 0.0 18.538839481465658 0.0 26 5.621577864475001E-4 0.0 0.0 18.688186066731877 0.0 27 5.621577864475001E-4 0.0 0.0 18.88100618748337 0.0 28 5.621577864475001E-4 0.0 0.0 18.996998077420372 0.0 29 5.621577864475001E-4 0.0 0.0 19.136600594388167 0.0 30 5.621577864475001E-4 0.0 0.0 19.293630002735835 0.0 31 5.621577864475001E-4 0.0 0.0 19.428360485554418 0.0 32 5.621577864475001E-4 0.0 0.0 19.583703420542744 0.0 33 5.621577864475001E-4 0.0 0.0 19.725741954585146 0.0 34 5.621577864475001E-4 0.0 0.0 19.924558425058745 0.0 35 5.621577864475001E-4 0.0 0.0 20.109883108657606 0.0 36 5.621577864475001E-4 0.0 0.0 20.268598990364616 0.0 37 5.621577864475001E-4 0.0 0.0 20.434435537366628 0.0 38 5.621577864475001E-4 0.0 0.0 20.64655640878615 0.0 39 5.621577864475001E-4 0.0 0.0 21.011022040332946 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTGCG 45 3.8380676E-10 45.0 1 CGACGAA 35 1.210301E-7 45.0 19 TCCGATC 20 7.0298865E-4 45.0 14 GCACGGG 40 6.8030204E-9 45.0 3 CGTCGAT 25 3.8879876E-5 45.0 40 CCGGTGA 30 2.1633077E-6 44.999996 18 CACCGGT 65 0.0 44.999996 16 TAACTCG 30 2.1633077E-6 44.999996 38 CGTTTTT 14025 0.0 44.13369 1 CCGATGA 515 0.0 44.126213 18 GATACCT 1940 0.0 43.492268 5 TGATACC 1950 0.0 43.384613 4 TACGGCT 1845 0.0 42.92683 7 ACGGCTG 1860 0.0 42.580647 8 ATACCTG 2010 0.0 41.865673 6 CGGCTGT 1910 0.0 41.58377 9 AGGCACG 65 0.0 41.53846 10 GTATGAT 175 0.0 41.142857 1 CGATGAA 555 0.0 40.945946 19 TACCTGT 2075 0.0 40.66265 7 >>END_MODULE