SRR2933424.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933424.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1024875
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTC	30731	2.9985120136602026	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28376	2.7687278936455666	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCG	26383	2.5742651542871084	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGC	22720	2.2168557141114773	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCT	7672	0.7485790950115868	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTC	5687	0.554896938651055	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	5403	0.5271862422246616	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCTTGGTT	5141	0.5016221490425662	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCT	4706	0.4591779485303086	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTA	3951	0.3855104281009879	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTT	3069	0.2994511525795829	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGT	1778	0.17348457128918163	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTAT	1155	0.11269667032564948	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAC	25	3.8905095E-5	45.0	3
CGTTTTT	33680	0.0	44.525684	1
GATACCT	3200	0.0	42.75	5
TACGGCT	2815	0.0	42.5222	7
ACGGCTG	2830	0.0	42.217316	8
TGATACC	3235	0.0	42.148376	4
CGGCTGT	2865	0.0	42.09424	9
CCGATGA	850	0.0	42.088238	18
CGATGAA	855	0.0	41.842106	19
ATACCTG	3305	0.0	41.732224	6
GAATCTG	3650	0.0	41.547943	1
CGCTTTT	1025	0.0	41.48781	1
AATCTGT	3735	0.0	40.78313	2
TCTCGCG	50	1.0804797E-9	40.5	1
CGACCTG	245	0.0	40.408165	12
TACCTGT	3465	0.0	40.064934	7
CACCGAG	135	0.0	40.0	16
ATGATAC	10360	0.0	39.57046	3
CACCGGT	245	0.0	39.489796	16
GAATGAT	10800	0.0	39.479168	1