SRR2933423.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933423.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	596409
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27185	4.558113643489619	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCG	12325	2.066534877910964	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTC	9172	1.537870823545587	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGC	8917	1.495114929519843	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCT	3119	0.5229632684952775	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	2719	0.45589519943528684	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCTTGGTT	2332	0.39100684261974583	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTC	2075	0.3479156082487018	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTA	1298	0.21763588409966986	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCT	1263	0.21176742805692067	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTT	1138	0.19080865647567358	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTCCTTGGTTCGTATGCCG	1020	0.1710235761029763	No Hit
GAATCTTTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTC	728	0.1220638856891831	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCGG	30	2.1637388E-6	45.000004	2
GCGACCG	95	0.0	45.0	11
GCGATCG	25	3.888541E-5	45.0	9
ATCCGGC	55	1.8189894E-12	44.999996	6
CGTTTTT	21600	0.0	44.625	1
CGGCTGT	1280	0.0	42.363285	9
CTACGGC	85	0.0	42.35294	6
TACGGCT	1355	0.0	42.17712	7
ACGGCTG	1360	0.0	42.022057	8
TGATCCG	75	0.0	42.0	4
GATACCT	1670	0.0	41.63174	5
TGATACC	1685	0.0	41.52819	4
CCGATGA	180	0.0	41.250004	18
GATCCGG	60	3.6379788E-12	41.250004	5
TCGCTTG	60	3.6379788E-12	41.250004	1
GAATGAT	4890	0.0	41.134968	1
GTTTGCG	55	6.002665E-11	40.90909	1
ATGATAC	4600	0.0	40.891304	3
AATGATA	4565	0.0	40.859802	2
CGACCAC	840	0.0	40.714287	12