##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933421.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 197413 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.95189273249482 31.0 25.0 31.0 16.0 33.0 2 28.03642617254183 31.0 28.0 33.0 16.0 34.0 3 28.204398899768506 31.0 28.0 33.0 16.0 34.0 4 31.428279799202688 35.0 28.0 35.0 19.0 37.0 5 33.437858702314436 35.0 33.0 37.0 28.0 37.0 6 32.099664155856 35.0 32.0 37.0 17.0 37.0 7 32.045792323707154 35.0 32.0 35.0 25.0 37.0 8 32.41535258569598 35.0 32.0 35.0 25.0 37.0 9 32.8494374737226 35.0 31.0 37.0 25.0 39.0 10 31.71155395034775 35.0 28.0 39.0 15.0 39.0 11 32.32199500539478 35.0 28.0 39.0 17.0 39.0 12 33.15116025793641 35.0 31.0 39.0 23.0 39.0 13 33.258108635196265 35.0 31.0 39.0 24.0 39.0 14 33.30098321792384 36.0 31.0 39.0 18.0 41.0 15 33.908070897053385 36.0 32.0 40.0 24.0 41.0 16 33.99623125123472 36.0 32.0 40.0 25.0 41.0 17 31.96558483990416 34.0 27.0 39.0 18.0 41.0 18 32.741926823461476 35.0 30.0 39.0 21.0 39.0 19 32.523091184471134 35.0 30.0 37.0 19.0 39.0 20 32.10164984068932 34.0 30.0 36.0 23.0 39.0 21 32.57234832559153 35.0 31.0 37.0 23.0 39.0 22 32.91104435878083 34.0 31.0 37.0 25.0 39.0 23 33.852436263062714 35.0 32.0 38.0 27.0 40.0 24 32.302214139899604 35.0 31.0 37.0 21.0 39.0 25 31.452655093636185 34.0 29.0 37.0 18.0 39.0 26 30.819712987493226 33.0 25.0 37.0 19.0 39.0 27 32.38514180930334 34.0 30.0 37.0 22.0 39.0 28 32.25438547613379 35.0 30.0 37.0 21.0 39.0 29 32.484228495590465 35.0 31.0 38.0 21.0 40.0 30 31.584302958771712 35.0 30.0 37.0 18.0 40.0 31 31.761439216262353 35.0 30.0 37.0 20.0 39.0 32 31.771058643554376 35.0 30.0 37.0 18.0 40.0 33 31.72151783317208 35.0 30.0 38.0 16.0 40.0 34 30.8905999098337 35.0 29.0 38.0 12.0 40.0 35 30.35931270990259 35.0 27.0 38.0 10.0 40.0 36 29.528252951933258 34.0 24.0 38.0 8.0 40.0 37 29.675107515715784 35.0 24.0 38.0 8.0 40.0 38 29.39937086210128 34.0 23.0 38.0 8.0 40.0 39 28.98104481467786 34.0 23.0 37.0 7.0 40.0 40 29.047666567044722 34.0 23.0 38.0 8.0 40.0 41 28.312167891678865 33.0 21.0 37.0 8.0 40.0 42 28.94836712881117 34.0 22.0 38.0 7.0 40.0 43 28.95208015682858 34.0 22.0 38.0 7.0 40.0 44 28.87009467461616 34.0 22.0 38.0 7.0 40.0 45 28.957322972651244 34.0 22.0 38.0 7.0 40.0 46 28.6227654713722 34.0 20.0 38.0 7.0 40.0 47 28.66960129272135 34.0 21.0 38.0 7.0 40.0 48 28.407232553074014 34.0 20.0 37.0 7.0 40.0 49 28.2885422945804 34.0 20.0 37.0 7.0 40.0 50 28.445558296566084 34.0 20.0 37.0 7.0 40.0 51 26.715793792708688 31.0 18.0 35.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 5.0 10 13.0 11 16.0 12 20.0 13 22.0 14 50.0 15 101.0 16 255.0 17 428.0 18 696.0 19 1192.0 20 1776.0 21 2563.0 22 3224.0 23 4515.0 24 6171.0 25 8359.0 26 10719.0 27 11657.0 28 11494.0 29 11573.0 30 12841.0 31 15056.0 32 16462.0 33 18235.0 34 18974.0 35 19558.0 36 13362.0 37 6804.0 38 1241.0 39 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.359393758263135 2.477040519114749 31.478676682893227 38.684889039728894 2 38.924488255586006 15.972605654136252 31.376859679960283 13.726046410317455 3 12.598967646507575 16.072903000308997 58.77981693201563 12.548312421167807 4 11.78544472755087 2.885828187606693 70.26133030752787 15.067396777314565 5 21.564942531646853 3.3543890219995647 58.547815999959475 16.53285244639411 6 13.045746734004346 13.771129560869852 61.11704902919261 12.066074675933196 7 49.33818948093591 1.3256472471417788 46.019259116674185 3.316904155248135 8 48.73539229939264 10.859467208339876 35.2271633580362 5.177977134231282 9 44.91142933849341 2.852902291135842 35.46068394685254 16.77498442351821 10 27.262642277864174 17.454777547577923 41.07834843703302 14.204231737524884 11 23.06484375395744 15.31054185894546 47.730899180905006 13.893715206192095 12 18.527655220274248 14.222467618647203 49.56563144271147 17.684245718367077 13 16.842355873220104 15.694001914767519 56.003404031142836 11.460238180869547 14 13.825330651983405 20.230683896197313 47.596662833754614 18.347322618064666 15 10.511465810255658 15.514175864811335 58.25908121552279 15.715277109410222 16 12.167891678866132 15.60738147943651 48.04648123477177 24.178245606925582 17 12.706356724227888 17.29217427423726 52.903304240348916 17.09816476118594 18 13.02751085288203 15.526839671146279 51.83903795596034 19.606611520011345 19 13.293450785915823 18.695830568402283 47.895528663259256 20.11518998242264 20 16.064798164254633 17.345868813097415 54.035448526692775 12.553884495955181 21 16.51512311752519 22.301469508087106 47.050092952338495 14.133314422049207 22 13.363354996884706 15.253301454311519 50.522002097126325 20.861341451677447 23 14.331882905381105 22.37086716680259 47.809921332435046 15.487328595381255 24 15.583066971273421 16.408240592058274 47.34946533409654 20.659227102571766 25 12.665325991702675 23.726907549148233 45.61452386620942 17.993242592939673 26 14.42762128127327 16.918845263483153 49.84220897306662 18.811324482176957 27 15.989321878498378 18.898451469761362 46.68841464341254 18.42381200832772 28 12.069113989453582 18.303759124272464 52.87392420965185 16.753202676622106 29 19.801127585316063 15.561285224377322 47.115438193026804 17.522148997279814 30 16.302877723351553 20.4322916930496 48.4593213212909 14.805509262307954 31 16.87781453095794 18.250571137665705 45.970630100348004 18.90098423102835 32 18.340230886517098 22.60590741237912 44.196684108949256 14.85717759215452 33 14.947850445512707 18.205994539366706 41.49625404608612 25.34990096903446 34 20.52600385992817 21.776174821313692 41.62187900492875 16.075942313829383 35 18.41266785875297 20.142037251852717 41.20701270939604 20.238282179998276 36 19.261649435447513 19.337125721203773 41.136601946173755 20.26462289717496 37 17.999827772233846 24.397582732646786 41.500813016366706 16.101776478752665 38 16.162056196906992 21.33648746536449 40.34334111735296 22.158115220375556 39 17.451738234057533 27.28695678602726 37.50614194607245 17.755163033842756 40 17.53683901262835 20.14811587889349 42.741866037191066 19.573179071287097 41 16.1823182870429 24.36313717941574 37.0993804865941 22.355164046947262 42 16.96139565276856 20.359348168560327 44.11057022587165 18.56868595279946 43 19.974368455978077 19.0443385187399 36.618662398119675 24.362630627162346 44 20.76813583705227 21.016852993470543 37.43623773510357 20.778773434373623 45 16.909220770668597 20.04629887596055 39.30085657986049 23.743623773510354 46 21.21542147680244 24.758754489319344 34.60258442959683 19.42323960428138 47 15.187956213623217 20.238788732251674 43.637956973451594 20.935298080673512 48 18.613262551098458 23.442225182738728 34.98452482865871 22.959987437504115 49 16.189410018590465 19.706402313930692 41.63099694548991 22.473190721988924 50 18.30021325849868 18.751044764022634 37.513233677620015 25.43550829985867 51 18.383287828055902 19.300653958959135 35.73118285016691 26.58487536281805 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 49.0 1 183.5 2 318.0 3 8412.5 4 16507.0 5 11485.5 6 6464.0 7 6465.5 8 6467.0 9 6252.0 10 6037.0 11 5505.0 12 4973.0 13 4433.5 14 3894.0 15 3453.0 16 3012.0 17 2714.0 18 2416.0 19 2269.0 20 2122.0 21 1934.5 22 1747.0 23 1746.5 24 1746.0 25 1769.5 26 1818.5 27 1844.0 28 2017.5 29 2191.0 30 2298.5 31 2406.0 32 2607.0 33 2808.0 34 3305.5 35 3803.0 36 3962.0 37 4121.0 38 4266.0 39 4411.0 40 4889.5 41 5368.0 42 6001.0 43 6634.0 44 7330.0 45 8026.0 46 17215.5 47 26405.0 48 21697.5 49 16990.0 50 15520.5 51 14051.0 52 11513.5 53 8976.0 54 8110.0 55 7244.0 56 6518.5 57 5793.0 58 5320.5 59 4848.0 60 4421.0 61 3994.0 62 3663.0 63 3332.0 64 2797.0 65 2262.0 66 1890.0 67 1518.0 68 1285.5 69 1053.0 70 860.0 71 667.0 72 520.5 73 374.0 74 360.0 75 298.0 76 250.0 77 171.0 78 92.0 79 65.0 80 38.0 81 23.0 82 8.0 83 9.5 84 11.0 85 7.5 86 4.0 87 2.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 197413.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.42608642794547 #Duplication Level Percentage of deduplicated Percentage of total 1 82.29646397627039 37.384062853003606 2 6.531217592024712 5.933753096300649 3 2.620515851333118 3.5711933864537797 4 1.7250800093669503 3.134545344024963 5 1.2723440793068457 2.8898806056338744 6 0.9288892358129732 2.5317481624817004 7 0.8207232623749678 2.6097572095049464 8 0.6289238043199483 2.285563767330419 9 0.559786790369883 2.288603080850805 >10 2.509004538510432 17.320034648174133 >50 0.05798588266779665 1.7693870211181635 >100 0.03791384635971319 3.304240348913192 >500 0.004460452512907435 1.5692988810260722 >1k 0.004460452512907435 5.012334547370234 >5k 0.0011151131282268586 2.6872597042747945 >10k+ 0.0011151131282268586 5.708337343538672 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11269 5.708337343538672 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCG 5305 2.6872597042747945 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGC 3941 1.9963224306403329 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTC 3345 1.6944172876153039 RNA PCR Primer, Index 11 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGC 1407 0.7127190205305629 Illumina PCR Primer Index 11 (100% over 24bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTACATCT 1202 0.6088758085840345 No Hit GAACTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCT 964 0.48831637227538205 TruSeq Adapter, Index 11 (95% over 24bp) GAATGATCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTC 861 0.43614149017541903 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTACATCTCGTA 715 0.36218486117935494 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCT 558 0.2826561573959162 TruSeq Adapter, Index 11 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGCT 432 0.21883057346780607 TruSeq Adapter, Index 11 (96% over 27bp) GAATGATACCTGTCTCTTCTACACATCTGACGCGGTACATCTCGTATGCCG 417 0.2112322896668406 No Hit TCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGC 319 0.16159016883386604 Illumina PCR Primer Index 11 (100% over 24bp) CCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTCTGC 276 0.139808421937765 RNA PCR Primer, Index 11 (96% over 26bp) GAATCTTTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTTC 271 0.13727566067077648 Illumina PCR Primer Index 11 (100% over 21bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTACATCTCGT 266 0.134742899403788 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCTT 264 0.1337297948969926 TruSeq Adapter, Index 11 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 249 0.1261315110960271 No Hit GAATGACTCTCTCTTATACACATCTGACGCGGTACATCTCGTATGCCGTCT 228 0.11549391377467544 TruSeq Adapter, Index 11 (95% over 21bp) GAATCTGTCTCTTATCCACATCTGACGCGGTACATCTCGTATGCCGTCTTC 225 0.11397425701448233 Illumina PCR Primer Index 11 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 223 0.11296115250768693 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTACATCTCGTATGCC 201 0.10181700293293754 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0010131045067953985 0.0 0.0 0.28214960514251847 0.0 2 0.0010131045067953985 0.0 0.0 1.4700146393601232 0.0 3 0.0010131045067953985 0.0 0.0 1.7435528561948808 0.0 4 0.0010131045067953985 0.0 0.0 2.696377644835953 0.0 5 0.0010131045067953985 0.0 0.0 5.04627354834788 0.0 6 0.0010131045067953985 0.0 0.0 5.48646745655048 0.0 7 0.0010131045067953985 0.0 0.0 6.067989443451039 0.0 8 0.0010131045067953985 0.0 0.0 6.92203654267956 0.0 9 0.0010131045067953985 0.0 0.0 7.1474522954415365 0.0 10 0.0010131045067953985 0.0 0.0 11.215066890225062 0.0 11 0.0010131045067953985 0.0 0.0 12.079245034521536 0.0 12 0.0010131045067953985 0.0 0.0 15.173266198274684 0.0 13 0.0010131045067953985 0.0 0.0 15.517215178331721 0.0 14 0.0010131045067953985 0.0 0.0 15.724901602224778 0.0 15 0.0010131045067953985 0.0 0.0 16.35150673967773 0.0 16 0.0010131045067953985 0.0 0.0 16.74357818380755 0.0 17 0.0010131045067953985 0.0 0.0 17.147806882018916 0.0 18 0.0010131045067953985 0.0 0.0 17.494288623342943 0.0 19 0.0010131045067953985 0.0 0.0 18.524109354500464 0.0 20 0.0010131045067953985 0.0 0.0 18.903010440041943 0.0 21 0.0010131045067953985 0.0 0.0 19.31331776529408 0.0 22 0.0010131045067953985 0.0 0.0 19.982473292032438 0.0 23 0.0010131045067953985 0.0 0.0 20.354282646026352 0.0 24 0.0010131045067953985 0.0 0.0 20.644030534969836 0.0 25 0.0010131045067953985 0.0 0.0 20.905918049976446 0.0 26 0.0010131045067953985 0.0 0.0 21.142477952313172 0.0 27 0.0010131045067953985 0.0 0.0 21.39170166098484 0.0 28 0.0010131045067953985 0.0 0.0 21.60698636867886 0.0 29 0.0010131045067953985 0.0 0.0 21.83645453946802 0.0 30 0.0010131045067953985 0.0 0.0 22.111005860809573 0.0 31 0.0010131045067953985 0.0 0.0 22.33591506131815 0.0 32 0.0010131045067953985 0.0 0.0 22.548667007745184 0.0 33 0.0010131045067953985 0.0 0.0 22.750781356850865 0.0 34 0.0010131045067953985 0.0 0.0 22.97872987087983 0.0 35 0.0010131045067953985 0.0 0.0 23.235045311099068 0.0 36 0.0010131045067953985 0.0 0.0 23.46350037738143 0.0 37 0.0010131045067953985 0.0 0.0 23.674226114794873 0.0 38 0.0010131045067953985 0.0 0.0 23.898122210796654 0.0 39 0.0010131045067953985 0.0 0.0 24.1741931888984 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGTC 25 3.8790356E-5 45.0 17 ACACGTG 45 3.8198777E-10 45.0 42 GATGTTG 20 7.01908E-4 45.0 11 TTGTGCG 25 3.8790356E-5 45.0 1 GACACGA 45 3.8198777E-10 45.0 25 ACCGCCT 20 7.01908E-4 45.0 14 GACCGAT 35 1.2050987E-7 45.0 9 GATCCCT 25 3.8790356E-5 45.0 5 GTCTCCT 20 7.01908E-4 45.0 14 ACCGAGG 20 7.01908E-4 45.0 17 AACGGGC 20 7.01908E-4 45.0 29 TAATTGC 25 3.8790356E-5 45.0 30 ACGTGAG 45 3.8198777E-10 45.0 44 CGGGATA 45 3.8198777E-10 45.0 6 TAGGGCG 25 3.8790356E-5 45.0 5 CCGGTCT 25 3.8790356E-5 45.0 18 CGGTCTC 25 3.8790356E-5 45.0 19 ACCCGGG 20 7.01908E-4 45.0 39 GGACCGA 35 1.2050987E-7 45.0 8 ATTGCAA 25 3.8790356E-5 45.0 32 >>END_MODULE