SRR2933420.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933420.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	474171
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCG	17209	3.629281419572264	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGC	13733	2.8962125477939393	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTC	13566	2.860993186002518	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9309	1.9632158018942532	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTCTGT	3179	0.6704332403289109	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTC	3053	0.6438605481988565	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCT	2796	0.5896606920288251	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	2772	0.5845992268611957	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCT	2715	0.5725782470880758	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTA	2569	0.5417876673183303	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGT	955	0.2014041347952532	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTT	732	0.15437468761269668	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTAT	705	0.1486805392991136	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATG	654	0.13792492581790114	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	25	3.887328E-5	45.0	1
TCGATCT	20	7.02909E-4	45.0	18
TCTAGCG	20	7.02909E-4	45.0	1
ACGGGAT	40	6.8012014E-9	45.0	5
GAACGTC	20	7.02909E-4	45.0	9
TCGAGTC	20	7.02909E-4	45.0	15
CCACCGT	20	7.02909E-4	45.0	15
CGTTTTT	8205	0.0	44.259598	1
GATACCT	2175	0.0	43.241383	5
TGATACC	2190	0.0	43.047943	4
ACGGCTG	1630	0.0	42.51534	8
CACCGGT	90	0.0	42.5	16
CGGCTGT	1635	0.0	42.38532	9
TACGGCT	1660	0.0	41.88253	7
GGATCAC	65	0.0	41.538464	8
AGCGGGA	65	0.0	41.538464	4
ATACCTG	2265	0.0	41.52318	6
TACCTGT	2220	0.0	41.4527	7
CGACCAC	1550	0.0	41.370968	12
ACCACCG	945	0.0	41.19048	14