##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933420.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 474171 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.18399691250625 31.0 28.0 31.0 25.0 34.0 2 28.19610435897598 31.0 25.0 33.0 16.0 34.0 3 28.255367789257463 31.0 25.0 33.0 16.0 34.0 4 32.83492664038923 35.0 32.0 37.0 28.0 37.0 5 34.05261814830515 35.0 33.0 37.0 30.0 37.0 6 33.21700610117447 35.0 32.0 37.0 28.0 37.0 7 33.23309523357607 35.0 32.0 35.0 28.0 37.0 8 33.15330545309604 35.0 32.0 37.0 28.0 37.0 9 34.342597923533916 37.0 33.0 39.0 27.0 39.0 10 34.26795607491812 37.0 32.0 39.0 27.0 39.0 11 34.556075761697784 37.0 33.0 39.0 27.0 39.0 12 34.66404314055478 37.0 33.0 39.0 27.0 39.0 13 34.8096108787758 37.0 33.0 39.0 27.0 39.0 14 35.628870175527396 38.0 34.0 40.0 27.0 41.0 15 35.85757247912673 38.0 34.0 40.0 27.0 41.0 16 35.79564123491314 37.0 34.0 40.0 29.0 41.0 17 35.07647662973906 37.0 33.0 40.0 27.0 41.0 18 34.894896566850356 37.0 33.0 39.0 27.0 40.0 19 34.38268261871772 37.0 32.0 38.0 27.0 40.0 20 33.84965550402703 35.0 32.0 38.0 26.0 40.0 21 34.447119288189285 35.0 33.0 39.0 27.0 40.0 22 35.089497248882786 36.0 33.0 39.0 29.0 40.0 23 35.31535458726915 36.0 34.0 39.0 29.0 40.0 24 34.91409217349859 36.0 33.0 39.0 27.0 40.0 25 33.8954216938615 35.0 33.0 39.0 24.0 40.0 26 34.04186675271158 35.0 33.0 39.0 25.0 40.0 27 34.67305887538462 36.0 33.0 39.0 27.0 40.0 28 34.31452999023559 36.0 33.0 39.0 25.0 40.0 29 34.482323887373965 36.0 33.0 39.0 25.0 40.0 30 33.837796912928034 35.0 33.0 39.0 23.0 40.0 31 33.93179675686619 36.0 33.0 39.0 24.0 40.0 32 33.61991349112451 36.0 33.0 39.0 21.0 40.0 33 33.28028285154512 36.0 33.0 40.0 18.0 41.0 34 33.14585666352434 37.0 33.0 40.0 15.0 41.0 35 32.80073011635043 37.0 32.0 40.0 12.0 41.0 36 32.37502504370786 37.0 31.0 40.0 10.0 41.0 37 32.39531730114241 37.0 31.0 40.0 10.0 41.0 38 32.129752768516 37.0 31.0 40.0 10.0 41.0 39 31.90124870563573 36.0 30.0 40.0 10.0 40.0 40 31.661457575431648 36.0 30.0 40.0 10.0 40.0 41 31.130634307032693 35.0 28.0 39.0 8.0 40.0 42 31.510547882514956 36.0 30.0 39.0 8.0 40.0 43 31.41530797961073 36.0 29.0 39.0 8.0 40.0 44 31.589930636837764 36.0 30.0 40.0 8.0 40.0 45 31.736078334609246 37.0 30.0 40.0 8.0 40.0 46 31.45957681933311 36.0 29.0 40.0 8.0 40.0 47 31.458583506793964 36.0 30.0 39.0 8.0 40.0 48 31.228862583329644 36.0 29.0 39.0 8.0 40.0 49 31.489698863911965 36.0 29.0 40.0 8.0 40.0 50 31.38722106581803 36.0 29.0 40.0 8.0 40.0 51 30.21035449236668 35.0 26.0 38.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 9.0 9 35.0 10 40.0 11 32.0 12 50.0 13 59.0 14 92.0 15 126.0 16 208.0 17 424.0 18 873.0 19 1534.0 20 2438.0 21 3450.0 22 4967.0 23 6827.0 24 9445.0 25 13479.0 26 17769.0 27 19432.0 28 18490.0 29 18105.0 30 19896.0 31 23106.0 32 28321.0 33 34263.0 34 40704.0 35 47442.0 36 54548.0 37 57121.0 38 44308.0 39 6578.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.699745450480943 2.882504412964943 33.959056964681515 31.458693171872593 2 30.326612129379487 20.05816467055134 35.239607652091756 14.375615547977416 3 13.13260406056043 20.26673921433407 51.97302239065653 14.627634334448963 4 11.981331629306727 3.20622728931124 67.81561925971855 16.996821821663495 5 25.168979123565126 4.015639927367975 51.863568206406555 18.951812742660348 6 14.89525930518737 18.377969129280363 55.40174325296149 11.325028312570781 7 57.31350082565151 1.432816431203089 38.20288461335679 3.0507981297886206 8 55.574887540570806 14.097024069375816 26.571637658144425 3.756450731908953 9 52.27207062431064 3.502744790381529 25.34802845387002 18.877156131437815 10 30.875991994449258 21.686901982618085 32.614605279529954 14.822500743402697 11 26.304223581788005 17.774178513658576 40.399560496107945 15.522037408445478 12 20.288250441296494 15.106575475935896 43.3120119113147 21.293162171452913 13 19.137610693188744 16.253419125167927 50.89324315489559 13.715727026747734 14 16.955275628412537 23.079859375626093 40.47084279721872 19.49402219874265 15 13.271372563906269 17.142760733996806 52.124444556921446 17.461422145175476 16 15.042885372576558 18.859019214587143 40.47991125564406 25.618184157192236 17 15.412583224195492 19.499083663910277 46.597746382634114 18.49058672926012 18 14.934696554618482 18.432590774214365 44.80366787509148 21.829044796075678 19 15.731244635374159 21.456183528726978 40.81839673872928 21.994175097169585 20 18.60025180789209 19.73528537173298 47.26311815779539 14.401344662579532 21 18.668581587655087 25.879904085235072 40.424867821946094 15.026646505163749 22 16.28737312066744 16.673942522845135 43.96409734041095 23.074587016076478 23 16.75619133181911 24.966309622477965 42.0936750665899 16.183823979113022 24 18.507458279818884 18.971004131420944 40.1966801006388 22.324857488121374 25 14.995855925394002 28.326489810637934 38.41567704477921 18.261977219188857 26 15.651315664602011 18.12109977202317 43.90504691345527 22.322537649919543 27 18.70148111124468 20.69527659852669 39.568003947942834 21.0352383422858 28 13.456116042524743 20.96121441420922 46.21539486809611 19.36727467516993 29 19.49317862121471 16.87218324191062 40.31203932758435 23.32259880929032 30 15.323374900616022 23.151563465500843 45.433820288461334 16.0912413454218 31 18.289815277610817 17.878782127122918 40.19204042423514 23.639362171031124 32 20.115317048069155 22.43304630607945 37.67058719322776 19.78104945262363 33 17.032673866600867 18.701692005626665 39.24512464912448 25.020509478648002 34 19.064219448258118 20.321149964886086 35.56986825427958 25.04476233257622 35 16.42403268019343 20.26821547500796 42.324604414862996 20.983147429935613 36 19.924246737991147 21.192565551246282 36.61948959341672 22.26369811734585 37 16.455666837491115 22.094982611758205 39.79007573217257 21.65927481857811 38 18.617123358450854 22.069464391538073 39.22930757047563 20.084104679535443 39 19.74351025263038 22.097091555578054 32.13692950433493 26.022468687456634 40 17.095942181196236 21.635021964649884 42.579997511446294 18.68903834270759 41 21.27818867033201 23.88885022491886 31.872046160562327 22.960914944186804 42 16.637036005997835 22.239023474653656 41.15561685552259 19.968323663825917 43 22.748122512764382 21.508907124223118 31.794647922373997 23.948322440638503 44 20.680092203023804 21.687956454528006 35.02681522066934 22.605136121778852 45 17.240826621619625 21.38743196020001 36.178720335068995 25.19302108311137 46 23.48224585645263 25.023672894377768 31.228818295509424 20.265262953660176 47 15.649628509546135 21.496675250068016 43.21310244616394 19.640593794221918 48 20.308074513203042 23.58263158227728 31.605264767351866 24.504029137167816 49 16.808704032933267 20.70919562773767 39.93158586248421 22.550514476844853 50 20.70497774009798 20.140624373907304 35.82568313962685 23.328714746367872 51 19.11757572690021 20.3810439693697 33.499307211955184 27.002073091774907 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 52.0 1 566.5 2 1081.0 3 11171.5 4 21262.0 5 16480.0 6 11698.0 7 11107.5 8 10517.0 9 10097.5 10 9678.0 11 9100.5 12 8523.0 13 7883.5 14 7244.0 15 6690.0 16 6136.0 17 5695.5 18 5255.0 19 4840.0 20 4425.0 21 4155.5 22 3886.0 23 3840.0 24 3794.0 25 3850.0 26 4537.0 27 5168.0 28 5679.0 29 6190.0 30 6364.0 31 6538.0 32 7587.0 33 8636.0 34 9595.5 35 10555.0 36 11085.5 37 11616.0 38 12736.5 39 13857.0 40 15370.5 41 16884.0 42 17556.0 43 18228.0 44 20341.0 45 22454.0 46 53265.5 47 84077.0 48 58898.0 49 33719.0 50 31159.5 51 28600.0 52 25090.5 53 21581.0 54 20106.0 55 18631.0 56 17341.0 57 16051.0 58 15097.0 59 14143.0 60 13234.0 61 12325.0 62 10691.5 63 9058.0 64 7810.5 65 6563.0 66 5314.5 67 4066.0 68 3415.5 69 2765.0 70 2353.0 71 1941.0 72 1607.0 73 1273.0 74 1070.0 75 668.0 76 469.0 77 348.5 78 228.0 79 172.5 80 117.0 81 95.5 82 74.0 83 47.5 84 21.0 85 17.0 86 13.0 87 8.5 88 4.0 89 2.0 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 474171.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.706013765571655 #Duplication Level Percentage of deduplicated Percentage of total 1 81.05250931861474 32.993245600576564 2 5.8459961022312115 4.759343956218039 3 2.4596946612554156 3.0037309422049816 4 1.7216676378989881 2.803289062722218 5 1.3107687715338128 2.6678085828768414 6 1.1385701874745306 2.7807992234644656 7 0.9749571472871192 2.7780633340818364 8 0.8989073360736047 2.92727475169484 9 0.7365320784894335 2.6983156433198383 >10 3.7634393078248256 22.93159121116728 >50 0.06270617775349321 1.7342111221865797 >100 0.026874076180068335 2.0608905951723644 >500 0.002107770680789673 0.6533589459715885 >1k 0.0031616560211845095 3.664472827635791 >5k 5.269426701974183E-4 1.9967558857680625 >10k+ 0.0015808280105922548 9.546848314938758 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCG 17209 3.629281419572264 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGC 13733 2.8962125477939393 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTC 13566 2.860993186002518 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9309 1.9632158018942532 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTCTGT 3179 0.6704332403289109 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTC 3053 0.6438605481988565 No Hit GAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCT 2796 0.5896606920288251 No Hit GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC 2772 0.5845992268611957 TruSeq Adapter, Index 16 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCT 2715 0.5725782470880758 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTA 2569 0.5417876673183303 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGT 955 0.2014041347952532 No Hit GAATGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTT 732 0.15437468761269668 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTAT 705 0.1486805392991136 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATG 654 0.13792492581790114 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08056165391810127 0.0 2 0.0 0.0 0.0 0.7741932762653135 0.0 3 0.0 0.0 0.0 0.8874435593910214 0.0 4 0.0 0.0 0.0 1.6122875502719483 0.0 5 0.0 0.0 0.0 4.936404799112556 0.0 6 0.0 0.0 0.0 5.192852367605779 0.0 7 0.0 0.0 0.0 5.931826282079672 0.0 8 0.0 0.0 0.0 6.7463003853040355 0.0 9 0.0 0.0 0.0 6.871149859438894 0.0 10 0.0 0.0 0.0 11.19216485192051 0.0 11 0.0 0.0 0.0 11.381126218178673 0.0 12 0.0 0.0 0.0 14.92394094113727 0.0 13 0.0 0.0 0.0 15.196205588279334 0.0 14 0.0 0.0 0.0 15.419331844418997 0.0 15 0.0 0.0 0.0 16.141645102716108 0.0 16 0.0 0.0 0.0 16.475912698161633 0.0 17 0.0 0.0 0.0 16.63534885094196 0.0 18 0.0 0.0 0.0 16.764838001480477 0.0 19 0.0 0.0 0.0 17.69446043726841 0.0 20 0.0 0.0 0.0 17.889748634986113 0.0 21 0.0 0.0 0.0 18.02661908889409 0.0 22 0.0 0.0 0.0 18.31111561019126 0.0 23 0.0 0.0 0.0 18.45304752926687 0.0 24 0.0 0.0 0.0 18.582325785423404 0.0 25 0.0 0.0 0.0 18.685664032595835 0.0 26 0.0 0.0 0.0 18.818949282010077 0.0 27 0.0 0.0 0.0 19.031530819050513 0.0 28 0.0 0.0 0.0 19.15131882801774 0.0 29 0.0 0.0 0.0 19.281862450466182 0.0 30 0.0 0.0 0.0 19.412195178532638 0.0 31 0.0 0.0 0.0 19.54231701221711 0.0 32 0.0 0.0 0.0 19.69352828410004 0.0 33 0.0 0.0 0.0 19.825548167222372 0.0 34 0.0 0.0 0.0 20.015985794154428 0.0 35 0.0 0.0 0.0 20.169938693003157 0.0 36 0.0 0.0 0.0 20.326633218817683 0.0 37 0.0 0.0 0.0 20.498301245753115 0.0 38 0.0 0.0 0.0 20.667649434486716 0.0 39 2.1089438198455831E-4 0.0 0.0 20.84142640524199 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 25 3.887328E-5 45.0 1 TCGATCT 20 7.02909E-4 45.0 18 TCTAGCG 20 7.02909E-4 45.0 1 ACGGGAT 40 6.8012014E-9 45.0 5 GAACGTC 20 7.02909E-4 45.0 9 TCGAGTC 20 7.02909E-4 45.0 15 CCACCGT 20 7.02909E-4 45.0 15 CGTTTTT 8205 0.0 44.259598 1 GATACCT 2175 0.0 43.241383 5 TGATACC 2190 0.0 43.047943 4 ACGGCTG 1630 0.0 42.51534 8 CACCGGT 90 0.0 42.5 16 CGGCTGT 1635 0.0 42.38532 9 TACGGCT 1660 0.0 41.88253 7 GGATCAC 65 0.0 41.538464 8 AGCGGGA 65 0.0 41.538464 4 ATACCTG 2265 0.0 41.52318 6 TACCTGT 2220 0.0 41.4527 7 CGACCAC 1550 0.0 41.370968 12 ACCACCG 945 0.0 41.19048 14 >>END_MODULE