SRR2933419.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933419.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	337019
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14610	4.335067162385504	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCG	8120	2.409359709689958	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGC	5443	1.6150424753500543	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTC	4063	1.2055700123731896	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	1616	0.4794981885294301	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTCTGT	1565	0.4643655105498503	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCT	1097	0.3255009361490005	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTC	1071	0.3177862375711755	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTA	905	0.26853085434352364	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCT	687	0.2038460739602218	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCTTCTCTGTCGTATGCCG	657	0.19494449867811608	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGCT	352	0.10444514997670755	TruSeq Adapter, Index 13 (95% over 22bp)
GAATCTTTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTC	346	0.10266483492028639	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGT	338	0.10029108151172485	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATTT	40	6.7902874E-9	45.0	23
CCGAGCT	20	7.0261833E-4	45.0	27
CGAATGT	20	7.0261833E-4	45.0	25
ACATACG	45	3.8380676E-10	45.0	17
CGTTTTT	7630	0.0	44.174313	1
ACGGCTG	655	0.0	43.969467	8
TGATACC	985	0.0	43.401012	4
CGATGAA	125	0.0	43.2	19
CACCGGT	100	0.0	42.75	16
TACGGCT	670	0.0	42.649254	7
GATACCT	1015	0.0	42.118225	5
CGGCTGT	625	0.0	41.760002	9
GAATGAT	3045	0.0	41.674877	1
AATGATA	2830	0.0	41.660778	2
TGGGACG	65	0.0	41.538464	6
ATGATAC	2850	0.0	41.526318	3
ACCACCG	365	0.0	41.30137	14
AACATAC	55	6.002665E-11	40.909092	16
GATACGG	1870	0.0	40.78877	5
ATACGGC	1855	0.0	40.75472	6