##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933419.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 337019 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.22912951495316 31.0 26.0 31.0 16.0 33.0 2 28.458356947234428 31.0 28.0 33.0 16.0 34.0 3 28.691732513597156 31.0 28.0 33.0 16.0 34.0 4 31.669018660668982 35.0 28.0 35.0 19.0 37.0 5 33.39945522359274 35.0 33.0 37.0 28.0 37.0 6 32.25084639144974 35.0 32.0 37.0 17.0 37.0 7 31.567401244440223 33.0 30.0 35.0 23.0 37.0 8 32.49701945587638 35.0 32.0 35.0 25.0 37.0 9 32.37652179847427 34.0 31.0 37.0 25.0 39.0 10 31.115005385453046 35.0 27.0 37.0 15.0 39.0 11 31.85167008388251 35.0 27.0 39.0 17.0 39.0 12 32.769300840605425 35.0 31.0 39.0 23.0 39.0 13 32.943335538945874 35.0 31.0 39.0 23.0 39.0 14 33.12004664425448 36.0 31.0 39.0 18.0 41.0 15 33.66387651734769 36.0 31.0 39.0 24.0 41.0 16 33.82038401395767 36.0 32.0 39.0 24.0 41.0 17 31.656158851578102 34.0 27.0 38.0 17.0 41.0 18 32.486296024853196 35.0 30.0 39.0 19.0 39.0 19 32.44533394259671 35.0 30.0 37.0 18.0 39.0 20 32.24502179402348 34.0 30.0 37.0 23.0 39.0 21 32.77316412427786 35.0 31.0 37.0 23.0 39.0 22 33.27958364365214 35.0 31.0 38.0 25.0 39.0 23 34.19174883315184 35.0 33.0 39.0 27.0 40.0 24 32.525225580753606 35.0 31.0 38.0 22.0 39.0 25 31.621226102979357 35.0 30.0 37.0 18.0 39.0 26 31.295923968678323 34.0 27.0 37.0 20.0 39.0 27 32.74031434429513 35.0 31.0 38.0 22.0 40.0 28 32.57345728282382 35.0 31.0 38.0 21.0 40.0 29 32.97584705906789 35.0 31.0 38.0 22.0 40.0 30 31.881371673407138 35.0 30.0 38.0 18.0 40.0 31 32.151193256166565 35.0 30.0 38.0 21.0 40.0 32 32.19855557105089 35.0 30.0 38.0 20.0 40.0 33 32.35143419213753 35.0 31.0 38.0 18.0 40.0 34 31.808055332191955 35.0 30.0 38.0 15.0 40.0 35 31.363451318768377 35.0 30.0 38.0 12.0 40.0 36 30.842115726413052 35.0 29.0 38.0 10.0 40.0 37 31.044920316065266 35.0 29.0 38.0 10.0 40.0 38 30.934398357362642 35.0 29.0 38.0 10.0 40.0 39 30.50968343031105 35.0 27.0 38.0 9.0 40.0 40 30.270593052617212 35.0 26.0 38.0 9.0 40.0 41 29.658360507864543 34.0 24.0 38.0 8.0 40.0 42 30.25592028936054 35.0 26.0 38.0 8.0 40.0 43 30.31975051851676 35.0 26.0 38.0 8.0 40.0 44 30.318590346538326 35.0 26.0 38.0 8.0 40.0 45 30.62229429201321 35.0 27.0 38.0 8.0 40.0 46 30.345437497589156 35.0 26.0 38.0 8.0 40.0 47 30.463834383224686 35.0 27.0 38.0 8.0 40.0 48 30.19360629519404 35.0 26.0 38.0 8.0 40.0 49 30.01342950990894 35.0 26.0 38.0 8.0 40.0 50 30.18366916998745 35.0 27.0 38.0 8.0 40.0 51 28.528726867031235 33.0 23.0 37.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 3.0 9 20.0 10 18.0 11 19.0 12 37.0 13 44.0 14 74.0 15 159.0 16 338.0 17 667.0 18 1155.0 19 1745.0 20 2644.0 21 3671.0 22 4952.0 23 6550.0 24 8772.0 25 11728.0 26 15067.0 27 16794.0 28 17193.0 29 18075.0 30 20813.0 31 24229.0 32 28351.0 33 32455.0 34 36439.0 35 37406.0 36 28927.0 37 15379.0 38 3235.0 39 58.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.53060806660752 2.879362884585142 37.16259320691118 34.427435841896155 2 34.192434254448564 13.320910690495195 37.78392316160217 14.702731893454079 3 13.986748521596706 13.278183129141086 57.53503511671448 15.20003323254772 4 13.103118815259673 3.2710321969977953 66.17787127728704 17.447977710455493 5 20.87686450912263 4.138935787003107 56.65615291719458 18.328046786679682 6 15.682498612837852 12.49276747008329 59.098745174604396 12.72598874247446 7 58.26021678303004 1.4702435174278008 37.15814241927013 3.111397280272032 8 58.758111560475825 9.490266127429017 27.773805037698175 3.9778172743969926 9 54.31236814541614 3.4380850931253133 27.78537708556491 14.464169675893643 10 28.740812832510926 22.386274957791695 34.286790952438885 14.586121257258494 11 23.683234476394503 18.548212415323764 42.81628038775262 14.952272720529109 12 20.151386123631013 15.729380242656942 45.33512947341248 18.784104160299567 13 18.023909631207736 16.880947364985357 51.19295944739021 13.9021835564167 14 16.300267937415992 19.53183648399645 44.08505158462876 20.0828439939588 15 13.528020675392188 17.517409997655918 51.77423231331171 17.18033701364018 16 15.184307116216 16.942071515255815 44.00315709203338 23.870464276494797 17 15.580427216269706 17.852109228263092 47.7079927244458 18.859470831021397 18 15.19884635584344 16.94770917960115 47.117521564066124 20.73592290048929 19 16.33023657419908 20.11845029508722 42.97799233871088 20.573320792002825 20 18.33754180031393 18.578477771282927 48.41448108266893 14.669499345734216 21 19.06628409674232 22.285687157103904 42.484251629730075 16.163777116423702 22 16.472068340360632 17.09132126081912 44.95977971568369 21.47683068313656 23 16.567908634231305 22.99039520027061 43.15246321424014 17.28923295125794 24 17.48862823757711 17.99928193959391 43.671128334010845 20.840961488818138 25 15.5068408606043 23.128666336319316 41.726430854046804 19.63806194902958 26 15.818395995478 18.70962764710595 45.01259572902418 20.45938062839187 27 16.659594859636996 19.82232455736917 43.21388408368668 20.30419649930716 28 13.895655734543155 19.80748859856566 47.874155463045106 18.422700203846073 29 18.27730780757168 16.81092163943279 43.435830027387176 21.475940525608348 30 15.573009236867952 21.10385467881633 46.19976915248102 17.123366931834706 31 17.03642821324614 18.699539195119563 42.31690201442649 21.947130577207812 32 18.625656120278087 21.443894854592767 40.89146309258528 19.038985932543863 33 16.65247359941131 19.033644987374597 41.20628213839576 23.107599274818334 34 18.04705372694121 20.425554642319867 38.54085377975722 22.986537850981694 35 16.045089445995625 20.355528916767305 42.67652565582356 20.92285598141351 36 18.843744714689674 20.683997044677007 38.95240327696658 21.519854963666738 37 16.54713829190639 22.45570724499212 40.4383729107261 20.558781552375386 38 18.298374869072664 21.673852216047166 40.83508644913195 19.19268646574822 39 18.545838661915205 21.913007871959742 35.65882042258745 23.882333043537603 40 17.668736777451716 21.374462567392342 42.35280503473098 18.60399562042496 41 19.940418789445104 22.585670244110865 35.69976766888514 21.77414329755889 42 16.910322563416305 21.92517335817862 40.94635614015827 20.218147938246805 43 20.724350852622553 21.10800874728131 35.34281450007269 22.82482590002344 44 19.922318919704825 21.51006323085642 36.83679555158611 21.730822297852644 45 17.020998816090486 21.515997614377824 38.07263091991846 23.390372649613226 46 20.462941258504713 24.101608514653478 34.51378112213258 20.92166910470923 47 15.846881036380738 21.191386835757033 43.00499378373326 19.956738344128965 48 19.435699470949707 22.163438856562983 35.04194125553752 23.358920416949786 49 16.517763093475445 20.50596553903489 40.33630151415796 22.639969853331714 50 19.768321667324397 19.937748316860475 37.66731252540658 22.626617490408552 51 18.609336565594226 20.151089404454943 36.27866678139809 24.96090724855275 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 59.0 1 313.5 2 568.0 3 11621.0 4 22674.0 5 15961.5 6 9249.0 7 8851.5 8 8454.0 9 8060.5 10 7667.0 11 7146.0 12 6625.0 13 6059.0 14 5493.0 15 4990.0 16 4487.0 17 4062.5 18 3638.0 19 3311.5 20 2985.0 21 2784.5 22 2584.0 23 2506.0 24 2428.0 25 2454.5 26 2855.0 27 3229.0 28 3529.0 29 3829.0 30 4140.5 31 4452.0 32 5166.0 33 5880.0 34 6550.0 35 7220.0 36 7801.0 37 8382.0 38 9055.0 39 9728.0 40 11008.0 41 12288.0 42 13062.0 43 13836.0 44 15014.5 45 16193.0 46 28493.0 47 40793.0 48 33748.0 49 26703.0 50 24722.5 51 22742.0 52 19602.5 53 16463.0 54 14924.5 55 13386.0 56 12393.0 57 11400.0 58 10698.0 59 9996.0 60 9416.5 61 8837.0 62 7838.0 63 6839.0 64 5926.5 65 5014.0 66 4249.5 67 3485.0 68 2938.5 69 2392.0 70 2027.5 71 1663.0 72 1367.0 73 1071.0 74 945.0 75 659.5 76 500.0 77 374.0 78 248.0 79 195.0 80 142.0 81 100.0 82 58.0 83 44.0 84 30.0 85 19.0 86 8.0 87 4.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 337019.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.04929984515871 #Duplication Level Percentage of deduplicated Percentage of total 1 79.14848325570617 34.86435271220124 2 6.93806761065124 6.112340410551206 3 3.2121753403315196 4.244822241644634 4 2.1114686938851843 3.7203487044245644 5 1.6697628711610597 3.6775942691043313 6 1.2655743135713202 3.34485974489004 7 1.0430116888051808 3.2160754235529345 8 0.8147454512043184 2.8711173342062515 9 0.6966888409480605 2.761979008832748 >10 3.0198858352898807 19.287001015332375 >50 0.04178035901889293 1.2339701391527746 >100 0.030821576325412818 2.6474542716541807 >500 0.002054771755027521 0.6785327244387752 >1k 0.0034246195917125356 2.8396398410038914 >5k 0.0013698478366850142 4.092013935777282 >10k+ 6.849239183425071E-4 4.407898223232772 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14610 4.335067162385504 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCG 8120 2.409359709689958 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGC 5443 1.6150424753500543 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTC 4063 1.2055700123731896 No Hit GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC 1616 0.4794981885294301 TruSeq Adapter, Index 16 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTCTGT 1565 0.4643655105498503 No Hit GAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCT 1097 0.3255009361490005 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTC 1071 0.3177862375711755 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTA 905 0.26853085434352364 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCT 687 0.2038460739602218 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCCTTCTCTGTCGTATGCCG 657 0.19494449867811608 No Hit CTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGCT 352 0.10444514997670755 TruSeq Adapter, Index 13 (95% over 22bp) GAATCTTTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTC 346 0.10266483492028639 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGT 338 0.10029108151172485 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12343517724519983 0.0 2 0.0 0.0 0.0 0.855144665434293 0.0 3 0.0 0.0 0.0 1.040594150478163 0.0 4 0.0 0.0 0.0 1.6459012696613544 0.0 5 0.0 0.0 0.0 3.302781148837306 0.0 6 0.0 0.0 0.0 3.595049537266445 0.0 7 0.0 0.0 0.0 4.02084155492717 0.0 8 0.0 0.0 0.0 4.593806283918711 0.0 9 0.0 0.0 0.0 4.756705111581246 0.0 10 0.0 0.0 0.0 7.900741501221 0.0 11 0.0 0.0 0.0 8.420000059343835 0.0 12 0.0 0.0 0.0 10.694352543921855 0.0 13 0.0 0.0 0.0 10.937958987475483 0.0 14 0.0 0.0 0.0 11.081867787869527 0.0 15 0.0 0.0 0.0 11.555134873701483 0.0 16 0.0 0.0 0.0 11.848590138834902 0.0 17 0.0 0.0 0.0 12.142638842320462 0.0 18 0.0 0.0 0.0 12.405532032318654 0.0 19 0.0 0.0 0.0 13.168100314819046 0.0 20 0.0 0.0 0.0 13.434850854106148 0.0 21 0.0 0.0 0.0 13.71525047549248 0.0 22 0.0 0.0 0.0 14.167747218999523 0.0 23 0.0 0.0 0.0 14.468323744358626 0.0 24 0.0 0.0 0.0 14.697687667460885 0.0 25 0.0 0.0 0.0 14.897676392132194 0.0 26 0.0 0.0 0.0 15.084312753880345 0.0 27 0.0 0.0 0.0 15.286378512784145 0.0 28 0.0 0.0 0.0 15.482509888166543 0.0 29 0.0 0.0 0.0 15.673597037555746 0.0 30 0.0 0.0 0.0 15.884861090917722 0.0 31 0.0 0.0 0.0 16.08336621970868 0.0 32 0.0 0.0 0.0 16.2842451019082 0.0 33 0.0 0.0 0.0 16.49847634703088 0.0 34 0.0 0.0 0.0 16.688376619715804 0.0 35 0.0 0.0 0.0 16.893409570380307 0.0 36 0.0 0.0 0.0 17.088650788234492 0.0 37 0.0 0.0 0.0 17.293980458075065 0.0 38 0.0 0.0 0.0 17.509101860725952 0.0 39 0.0 0.0 0.0 17.7236298250247 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATTT 40 6.7902874E-9 45.0 23 CCGAGCT 20 7.0261833E-4 45.0 27 CGAATGT 20 7.0261833E-4 45.0 25 ACATACG 45 3.8380676E-10 45.0 17 CGTTTTT 7630 0.0 44.174313 1 ACGGCTG 655 0.0 43.969467 8 TGATACC 985 0.0 43.401012 4 CGATGAA 125 0.0 43.2 19 CACCGGT 100 0.0 42.75 16 TACGGCT 670 0.0 42.649254 7 GATACCT 1015 0.0 42.118225 5 CGGCTGT 625 0.0 41.760002 9 GAATGAT 3045 0.0 41.674877 1 AATGATA 2830 0.0 41.660778 2 TGGGACG 65 0.0 41.538464 6 ATGATAC 2850 0.0 41.526318 3 ACCACCG 365 0.0 41.30137 14 AACATAC 55 6.002665E-11 40.909092 16 GATACGG 1870 0.0 40.78877 5 ATACGGC 1855 0.0 40.75472 6 >>END_MODULE