SRR2933416.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933416.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	683128
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21243	3.109666124064597	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	18546	2.714864564181237	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	16947	2.480794228900001	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	15289	2.2380871520417847	No Hit
GAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT	3925	0.5745628930449345	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTC	3546	0.5190828073216147	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACATGAGT	3434	0.5026876368703962	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	3304	0.4836575283109461	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	3053	0.44691478024616177	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTA	2811	0.41148950123549316	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTT	1443	0.21123420500989565	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGACATGAGTCGT	1049	0.15355833752971623	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTAT	727	0.10642222248246301	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATG	20	7.0312753E-4	45.0	1
TAAGGCG	20	7.0312753E-4	45.0	29
CCTTGCG	45	3.8380676E-10	45.0	1
GTACGGG	45	3.8380676E-10	45.0	3
CGTTTTT	19980	0.0	44.481983	1
ACGGCTG	1845	0.0	42.682926	8
TACGGCT	1850	0.0	42.567566	7
GATACCT	2255	0.0	42.206207	5
TGATACC	2285	0.0	41.750546	4
CGGCTGT	1915	0.0	41.240208	9
ATACCTG	2320	0.0	41.12069	6
CCGATGA	450	0.0	41.0	18
GGCGACT	425	0.0	40.764706	10
GAATGAT	7070	0.0	40.09901	1
GCGACTG	405	0.0	40.0	11
CGATGAA	450	0.0	40.0	19
ATGATAC	6755	0.0	39.937084	3
GAATCTG	2035	0.0	39.914005	1
CGCTTTT	565	0.0	39.82301	1
CGGGATA	85	0.0	39.705883	6