##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933413.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 431216 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.87394484434715 31.0 25.0 31.0 16.0 33.0 2 27.85857435716671 31.0 27.0 33.0 16.0 34.0 3 28.0135778820823 31.0 27.0 33.0 16.0 34.0 4 31.411046899929502 35.0 28.0 35.0 19.0 37.0 5 33.49483553485956 35.0 33.0 37.0 28.0 37.0 6 31.9189269414864 35.0 32.0 37.0 17.0 37.0 7 32.055760917962225 35.0 32.0 35.0 25.0 37.0 8 32.32235584950465 35.0 32.0 35.0 23.0 37.0 9 32.82697070609625 35.0 31.0 37.0 25.0 39.0 10 31.649090015212792 35.0 28.0 39.0 15.0 39.0 11 32.22280945048421 35.0 27.0 39.0 17.0 39.0 12 33.05957803049979 35.0 31.0 39.0 23.0 39.0 13 33.14778904307818 35.0 31.0 39.0 23.0 39.0 14 33.348688360357684 36.0 31.0 39.0 19.0 41.0 15 33.80014656227969 36.0 31.0 39.0 23.0 41.0 16 33.94649317279507 36.0 32.0 40.0 25.0 41.0 17 31.92637564468851 34.0 27.0 39.0 18.0 41.0 18 32.7245208897629 35.0 30.0 39.0 21.0 39.0 19 32.47425188304701 35.0 30.0 37.0 18.0 39.0 20 32.03843317502133 34.0 30.0 36.0 23.0 39.0 21 32.60670986234277 35.0 31.0 37.0 23.0 39.0 22 32.95322065971578 35.0 31.0 37.0 25.0 39.0 23 33.862277837557045 35.0 32.0 38.0 27.0 40.0 24 32.35255881043375 35.0 31.0 37.0 22.0 39.0 25 31.514454472932357 35.0 30.0 37.0 18.0 39.0 26 30.870765463248116 33.0 26.0 37.0 19.0 39.0 27 32.54830525768988 35.0 31.0 37.0 22.0 39.0 28 32.380711754665874 35.0 31.0 37.0 21.0 39.0 29 32.55996994545657 35.0 31.0 38.0 21.0 40.0 30 31.536081685280696 35.0 29.0 38.0 18.0 40.0 31 31.936836759303922 35.0 30.0 37.0 21.0 40.0 32 31.854451133538642 35.0 30.0 37.0 18.0 40.0 33 31.781589736929984 35.0 30.0 38.0 16.0 40.0 34 31.129088438276874 35.0 30.0 38.0 13.0 40.0 35 30.602095005751178 35.0 28.0 38.0 10.0 40.0 36 30.08185225038032 35.0 26.0 38.0 9.0 40.0 37 30.221153667767428 35.0 26.0 38.0 8.0 40.0 38 30.021724611331678 35.0 25.0 38.0 8.0 40.0 39 29.585952283774258 34.0 24.0 38.0 8.0 40.0 40 29.30543857370784 34.0 23.0 38.0 8.0 40.0 41 28.79085191644095 33.0 22.0 37.0 8.0 40.0 42 29.37208266854662 34.0 23.0 38.0 8.0 40.0 43 29.53655012801009 35.0 23.0 38.0 8.0 40.0 44 29.370607769656043 34.0 23.0 38.0 7.0 40.0 45 29.68403074097436 35.0 23.0 38.0 7.0 40.0 46 29.337999981447812 34.0 23.0 38.0 7.0 40.0 47 29.386611350228193 35.0 23.0 38.0 7.0 40.0 48 29.186312660012614 34.0 23.0 38.0 7.0 40.0 49 29.12546380468257 34.0 23.0 37.0 7.0 40.0 50 29.293340228562947 34.0 24.0 38.0 7.0 40.0 51 27.606923212496753 32.0 20.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 16.0 10 20.0 11 36.0 12 36.0 13 41.0 14 82.0 15 174.0 16 374.0 17 777.0 18 1373.0 19 2310.0 20 3552.0 21 4857.0 22 6833.0 23 9132.0 24 12457.0 25 16609.0 26 21309.0 27 23841.0 28 24125.0 29 25809.0 30 29304.0 31 33694.0 32 38042.0 33 41338.0 34 43565.0 35 44077.0 36 29780.0 37 14637.0 38 2960.0 39 50.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.427516604207636 2.4945734852139068 31.81537790805536 37.262532002523095 2 38.29426551890468 17.084013580201105 30.780397758895774 13.84132314199844 3 12.434835442098624 17.188137731438534 56.97863715632073 13.39838967014211 4 11.46641126488813 2.8623705984935626 69.69917628288376 15.972041853734556 5 22.225752291195132 3.24408185225038 57.547725501836666 16.98244035471782 6 13.403491521650402 14.839430818893549 59.78140885310378 11.97566880635227 7 48.87434603539758 1.548180030425587 46.20399057548885 3.373483358687989 8 48.60232458906905 11.823772772809914 34.295341545768245 5.278561092352788 9 44.84991280471968 3.0100923898927685 34.38439204482208 17.75560276056547 10 27.677544432488588 18.12502319023413 39.96257096211643 14.234861415160848 11 24.0981317947386 15.381386590479018 46.660374383139775 13.86010723164261 12 19.0257318837891 13.42876887685058 49.02786538532893 18.51763385403139 13 17.52509183332715 15.390198879447887 55.28783718600423 11.796872101220735 14 15.0727245742273 19.14748061296427 46.915003153871844 18.86479165893659 15 11.377360765834291 15.334542317539238 57.32996920336908 15.958127713257392 16 13.053087083967199 15.505686245408334 46.616776742978 24.82444992764647 17 13.644901858929167 17.00423917479871 52.046770064190575 17.304088902081556 18 13.532197321064155 15.548124373863677 51.08553485955994 19.834143445512225 19 13.643510444881452 18.952218841601425 46.899001892323106 20.50526882119402 20 15.544645838744389 17.95248784831732 53.66104226188268 12.84182405105562 21 16.64084820600349 22.228998923973137 46.775861749100216 14.354291120923158 22 13.732792846276576 14.912016251716079 50.58601721642981 20.76917368557753 23 14.104068494675523 22.16383436607176 48.082167637564474 15.649929501688248 24 16.08010834477385 16.531622203257765 46.65434492226633 20.73392452970205 25 13.203823605803125 23.638965158992246 44.63911357649067 18.518097658713963 26 13.535212051500872 16.245918518793363 49.23750510185151 20.981364327854255 27 14.826676190122814 19.299144744165336 46.00571407368928 19.86846499202256 28 10.858827130718712 18.158649029720603 51.082288226781934 19.900235612778747 29 16.220873065934473 16.03210456012764 46.54882935698119 21.198193016956697 30 13.447552966494749 23.80500723535305 46.956281770620755 15.791158027531447 31 16.050424845089236 17.342120886052463 43.786872472264484 22.82058179659382 32 17.368557752959074 21.36307558161107 44.30958034952321 16.958786315906647 33 14.137926236503285 20.60591443731216 40.99476828318059 24.26139104300397 34 16.63481874513005 21.171988052391377 40.640885310378096 21.55230789210048 35 12.917192311973583 24.76299580720567 38.914140477162256 23.40567140365849 36 15.139048643835107 20.850803309710216 35.9437033876294 28.066444658825272 37 14.360320581796593 24.420244146784906 43.04640829653816 18.173026974880337 38 16.702534228785574 24.456652814366812 36.023709695373086 22.81710326147453 39 16.976642796185672 24.34742681162109 40.14275908129569 18.533171310897558 40 16.078021223702272 24.076101072316426 37.80587918815628 22.039998515825015 41 15.792549441579162 24.948749582575786 35.070822975028754 24.187878000816294 42 15.841017030907945 20.092714556046158 40.97273756075842 23.093530852287486 43 17.621795109643426 19.63262031093466 35.900569552150195 26.845015027271717 44 19.074663277800454 21.695391636673964 37.73306185299246 21.496883232533115 45 16.161737968906532 19.63957738117324 37.33001558383734 26.86866906608289 46 20.42781343920448 22.450233757560017 36.34930058253868 20.77265222069682 47 14.115199807057252 20.958637898408224 44.60316871359134 20.322993580943194 48 17.7667340729472 23.495185707394903 35.56686208303959 23.171218136618307 49 16.04787391933509 18.68251641868576 41.576611257467256 23.692998404511894 50 17.708526585284403 18.545230232644432 38.4350302400653 25.311212942005863 51 17.69414864012467 19.035935586805685 36.50676227227191 26.763153500797742 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 86.0 1 434.0 2 782.0 3 20323.0 4 39864.0 5 26528.5 6 13193.0 7 12426.0 8 11659.0 9 11310.0 10 10961.0 11 10285.0 12 9609.0 13 8774.5 14 7940.0 15 7142.5 16 6345.0 17 5818.0 18 5291.0 19 4806.0 20 4321.0 21 3999.0 22 3677.0 23 3489.0 24 3301.0 25 3362.5 26 3617.0 27 3810.0 28 4013.0 29 4216.0 30 4533.5 31 4851.0 32 5349.5 33 5848.0 34 6543.5 35 7239.0 36 7937.0 37 8635.0 38 9328.0 39 10021.0 40 10867.5 41 11714.0 42 12946.0 43 14178.0 44 16272.0 45 18366.0 46 39845.0 47 61324.0 48 49500.0 49 37676.0 50 33938.5 51 30201.0 52 25473.5 53 20746.0 54 18467.5 55 16189.0 56 14820.0 57 13451.0 58 12408.5 59 11366.0 60 10205.0 61 9044.0 62 7955.0 63 6866.0 64 5872.0 65 4878.0 66 4082.5 67 3287.0 68 2797.0 69 2307.0 70 1986.5 71 1666.0 72 1399.5 73 1133.0 74 941.0 75 619.0 76 489.0 77 399.0 78 309.0 79 216.0 80 123.0 81 87.5 82 52.0 83 32.5 84 13.0 85 10.5 86 8.0 87 7.5 88 7.0 89 4.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 431216.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.89728436286509 #Duplication Level Percentage of deduplicated Percentage of total 1 82.08297041229359 34.39053552712507 2 6.590855193412613 5.52277868465749 3 2.644885796292166 3.3244059694366723 4 1.5789081846325381 2.646078607776182 5 1.1468575812901154 2.402510910350982 6 0.9501542962417148 2.388533084294225 7 0.7619611739184916 2.234687278398789 8 0.6381107025166344 2.1388084446661635 9 0.5361224014398623 2.0215865435785223 >10 2.944455273968999 19.282007982784087 >50 0.06997807246681526 2.036009285036895 >100 0.045711482821064804 3.933226623689321 >500 0.0028216964704360988 0.7296626005834232 >1k 0.003950375058610538 3.3220218853522674 >5k 0.0011286785881744396 3.980988077129973 >10k+ 0.0011286785881744396 9.64615849513996 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27742 6.433434751957255 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCG 13055 3.027485065489221 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGC 9778 2.267541093094876 No Hit GAATCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTC 7059 1.6369986271381396 RNA PCR Primer, Index 29 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 2979 0.690837074691106 Illumina PCR Primer Index 8 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACTAACCT 2743 0.6361081221476013 No Hit GAACTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCT 2331 0.5405643575377537 TruSeq Adapter, Index 12 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTC 1880 0.43597640161775075 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACTAACCTCGTA 1755 0.406988608956996 No Hit GAATGACTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCT 1249 0.289646024266261 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCCACTAACCTCGTATGCCG 1113 0.2581073058513599 No Hit CTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGCT 820 0.19015991985455086 RNA PCR Primer, Index 29 (96% over 26bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCACTAACCTCGT 641 0.14864940076435013 No Hit GAATCTTTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTC 579 0.13427145560461579 No Hit GAATGACTCTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCT 541 0.12545916663574636 No Hit GAATCTGTCTCTTATCCACATCTGACGCCACTAACCTCGTATGCCGTCTTC 505 0.11711068234944899 No Hit GAATGCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTT 458 0.10621127230900523 RNA PCR Primer, Index 29 (95% over 21bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCACTAACCTCGTAT 454 0.10528366294386107 No Hit TCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 449 0.1041241512374309 Illumina PCR Primer Index 8 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTTCTGC 444 0.10296463953100071 RNA PCR Primer, Index 29 (96% over 25bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 440 0.10203703016585655 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.23932321620719083 0.0 2 0.0 0.0 0.0 1.4088067233126786 0.0 3 0.0 0.0 0.0 1.6680735408704686 0.0 4 0.0 0.0 0.0 2.679863455901451 0.0 5 0.0 0.0 0.0 5.016047642016994 0.0 6 0.0 0.0 0.0 5.469880523913769 0.0 7 0.0 0.0 0.0 6.081175095543765 0.0 8 0.0 0.0 0.0 6.916719231197358 0.0 9 0.0 0.0 0.0 7.142128306927387 0.0 10 0.0 0.0 0.0 11.226856146339653 0.0 11 0.0 0.0 0.0 12.077242031835553 0.0 12 0.0 0.0 0.0 15.392749805202033 0.0 13 0.0 0.0 0.0 15.789534711142444 0.0 14 0.0 0.0 0.0 16.003812474490744 0.0 15 0.0 0.0 0.0 16.714825052873735 0.0 16 0.0 0.0 0.0 17.13990204445104 0.0 17 0.0 0.0 0.0 17.521149493525286 0.0 18 0.0 0.0 0.0 17.87688768505807 0.0 19 0.0 0.0 0.0 19.006715891803644 0.0 20 0.0 0.0 0.0 19.393528997068753 0.0 21 0.0 0.0 0.0 19.79008200066788 0.0 22 0.0 0.0 0.0 20.411812177655747 0.0 23 0.0 0.0 0.0 20.814858446810877 0.0 24 0.0 0.0 0.0 21.134419873103038 0.0 25 0.0 0.0 0.0 21.42221067863901 0.0 26 0.0 0.0 0.0 21.664780527624206 0.0 27 2.3190234128603763E-4 0.0 0.0 21.9156988608957 0.0 28 2.3190234128603763E-4 0.0 0.0 22.16731290119105 0.0 29 2.3190234128603763E-4 0.0 0.0 22.423564988312123 0.0 30 2.3190234128603763E-4 0.0 0.0 22.727125153055546 0.0 31 2.3190234128603763E-4 0.0 0.0 22.96436124819116 0.0 32 2.3190234128603763E-4 0.0 0.0 23.228266112574673 0.0 33 2.3190234128603763E-4 0.0 0.0 23.486373418426034 0.0 34 2.3190234128603763E-4 0.0 0.0 23.75051018515083 0.0 35 2.3190234128603763E-4 0.0 0.0 24.04479425624281 0.0 36 2.3190234128603763E-4 0.0 0.0 24.283885570108716 0.0 37 2.3190234128603763E-4 0.0 0.0 24.539210047864643 0.0 38 2.3190234128603763E-4 0.0 0.0 24.818884271455605 0.0 39 2.3190234128603763E-4 0.0 0.0 25.203610255649142 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTTTCG 35 1.2095734E-7 45.000004 1 CCGGGTA 25 3.886737E-5 45.000004 5 CTTTGCG 50 2.1827873E-11 45.000004 1 CGGTAGT 30 2.1623346E-6 45.000004 12 TACGATT 20 7.028379E-4 45.0 45 GTACGGG 20 7.028379E-4 45.0 3 CGTTTTT 11615 0.0 44.34137 1 CCGATGA 160 0.0 43.59375 18 TACGGCT 1515 0.0 43.06931 7 CGATGAA 160 0.0 42.1875 19 ACGGCTG 1545 0.0 42.08738 8 GAATGAT 4885 0.0 41.960083 1 TGATACC 1685 0.0 41.39466 4 GATACCT 1685 0.0 41.39466 5 TCGTCCC 60 3.6379788E-12 41.250004 38 AATGATA 4670 0.0 41.24197 2 CGACCAC 865 0.0 41.098267 12 ATGATAC 4750 0.0 41.021053 3 TCGTTCA 55 6.002665E-11 40.909092 16 ACCGGTG 110 0.0 40.909092 17 >>END_MODULE