SRR2933411.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933411.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	664216
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35080	5.281414479627109	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCG	10062	1.5148686571838077	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGC	7091	1.0675744035072927	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTC	6339	0.9543582208197333	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCCTTGTT	2202	0.3315186626037313	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCT	2129	0.32052826189071026	No Hit
GCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	1849	0.27837330025172535	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTC	1329	0.20008551435075336	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTA	1118	0.16831873968708974	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCT	862	0.12977706047430354	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTGCCTTGTTCGTATGCCG	858	0.12917484673660376	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGTACG	25	3.8890204E-5	45.000004	7
GCGAGCC	25	3.8890204E-5	45.000004	33
CGTTTTT	22235	0.0	44.50416	1
ACCGGTG	105	0.0	42.85714	17
CGACCAC	1050	0.0	41.999996	12
CACCGGT	145	0.0	41.896553	16
GACCGCC	70	0.0	41.785717	13
CCGATGA	195	0.0	41.53846	18
GCGACCA	1060	0.0	41.39151	11
GAATGAT	4105	0.0	41.053593	1
CGGCGAC	1630	0.0	40.996933	9
ACGGCGA	1590	0.0	40.896225	8
TACGGCT	875	0.0	40.885715	7
ATACGGC	2465	0.0	40.80122	6
ATGATAC	3850	0.0	40.79221	3
TACGGCG	1665	0.0	40.67568	7
ACGGCTG	880	0.0	40.653408	8
TGATACC	1395	0.0	40.64516	4
GGCGACC	1480	0.0	40.591213	10
AATGATA	3830	0.0	40.535248	2