SRR2933408.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933408.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	621560
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCG	23104	3.717098912413926	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGC	20513	3.30024454598108	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTC	19881	3.198564901216294	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14165	2.2789433039449127	No Hit
GAACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCT	4717	0.7588969689169187	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCCTCTAT	4706	0.7571272282643671	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTC	4271	0.687142029731643	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCCTCTATCGTA	3856	0.6203745414762855	No Hit
GCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC	3844	0.6184439153098655	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCT	3629	0.5838535298281743	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACCCTCTATCGT	1440	0.23167513997039707	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTT	1073	0.1726301563807195	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATG	1037	0.16683827788145955	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTAT	1011	0.16265525452088292	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATACGG	20	7.030784E-4	45.0	27
CGATATC	20	7.030784E-4	45.0	10
CGTTAGG	25	3.8887323E-5	44.999996	2
GCGATAT	25	3.8887323E-5	44.999996	9
CCTTGCG	25	3.8887323E-5	44.999996	1
CGTTTTT	12570	0.0	44.19451	1
GTATGAT	150	0.0	43.500004	1
TGATACC	2665	0.0	42.973736	4
GATACCT	2680	0.0	42.649254	5
ATACCTG	2690	0.0	42.490707	6
CGATGAA	670	0.0	42.313435	19
TACGGCT	2460	0.0	42.07317	7
ACGGCTG	2480	0.0	41.91532	8
CGGCTGT	2475	0.0	41.909092	9
CCGATGA	670	0.0	41.641792	18
TACCTGT	2780	0.0	41.43885	7
GAATCTG	2320	0.0	40.732758	1
GAATGAT	9005	0.0	40.577454	1
ATGATAC	8645	0.0	40.47137	3
AATCTGT	2345	0.0	40.394455	2