##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933408.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 621560 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.149472295514514 31.0 28.0 31.0 25.0 34.0 2 28.09782643670764 31.0 25.0 33.0 16.0 34.0 3 28.11056856940601 31.0 25.0 33.0 16.0 34.0 4 32.815390308256646 35.0 32.0 37.0 28.0 37.0 5 34.07671182186756 35.0 33.0 37.0 30.0 37.0 6 33.23856425767424 35.0 32.0 37.0 28.0 37.0 7 33.341865628418816 35.0 32.0 36.0 28.0 37.0 8 33.13974033078062 35.0 32.0 37.0 28.0 37.0 9 34.41775854302079 37.0 34.0 39.0 28.0 39.0 10 34.334426282257546 37.0 32.0 39.0 27.0 39.0 11 34.534950769032754 37.0 33.0 39.0 27.0 39.0 12 34.65026546109788 37.0 33.0 39.0 27.0 39.0 13 34.72465409614518 37.0 33.0 39.0 27.0 39.0 14 35.58386800952442 38.0 34.0 40.0 27.0 41.0 15 35.739243194542766 38.0 34.0 40.0 27.0 41.0 16 35.74143123753137 37.0 34.0 40.0 27.0 41.0 17 35.01094986807388 37.0 33.0 40.0 27.0 41.0 18 34.84138940729777 37.0 33.0 39.0 27.0 40.0 19 34.2072865049231 37.0 32.0 38.0 27.0 40.0 20 33.5628016603385 35.0 32.0 38.0 25.0 40.0 21 34.23471426732737 35.0 33.0 38.0 27.0 40.0 22 34.86878981916468 35.0 33.0 39.0 29.0 40.0 23 35.09133953278847 35.0 33.0 39.0 29.0 40.0 24 34.707128837119505 35.0 33.0 39.0 27.0 40.0 25 33.717293583885706 35.0 33.0 38.0 24.0 40.0 26 33.77590095887766 35.0 32.0 38.0 25.0 40.0 27 34.424023424930816 35.0 33.0 39.0 27.0 40.0 28 34.05648851277431 35.0 33.0 39.0 25.0 40.0 29 34.01024036295772 35.0 33.0 39.0 24.0 40.0 30 33.51533560718193 35.0 33.0 39.0 22.0 40.0 31 33.586643284638654 35.0 33.0 39.0 23.0 40.0 32 33.073297831263275 35.0 32.0 39.0 20.0 40.0 33 32.59817716712787 35.0 31.0 39.0 15.0 40.0 34 32.320862024583306 36.0 31.0 39.0 12.0 40.0 35 31.991329879657634 36.0 31.0 40.0 10.0 41.0 36 31.687846708282386 36.0 30.0 40.0 9.0 41.0 37 31.681737885320807 36.0 30.0 40.0 8.0 40.0 38 31.34955112941631 35.0 29.0 39.0 8.0 40.0 39 31.06855975287985 35.0 28.0 39.0 8.0 40.0 40 30.671061522620505 35.0 26.0 39.0 8.0 40.0 41 30.19017311281292 35.0 24.0 39.0 8.0 40.0 42 30.56803204839436 35.0 26.0 39.0 7.0 40.0 43 30.416810927344102 35.0 25.0 39.0 7.0 40.0 44 30.650316944462322 35.0 26.0 39.0 7.0 40.0 45 30.764606795804106 35.0 26.0 39.0 7.0 40.0 46 30.51970847544887 35.0 26.0 39.0 7.0 40.0 47 30.386649720059207 35.0 25.0 39.0 7.0 40.0 48 30.27440150588841 35.0 25.0 39.0 7.0 40.0 49 30.54661657764335 35.0 27.0 39.0 7.0 40.0 50 30.45370197567411 35.0 26.0 39.0 7.0 40.0 51 29.170509685307934 34.0 23.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 21.0 9 30.0 10 46.0 11 38.0 12 53.0 13 67.0 14 108.0 15 145.0 16 300.0 17 570.0 18 1106.0 19 2126.0 20 3404.0 21 5040.0 22 7074.0 23 9918.0 24 13989.0 25 19893.0 26 25762.0 27 28178.0 28 27823.0 29 27020.0 30 29051.0 31 33588.0 32 39505.0 33 46691.0 34 53339.0 35 61377.0 36 66323.0 37 64490.0 38 47626.0 39 6859.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.98233477057726 2.5011261985970785 30.616352403629577 33.900186627196085 2 32.38448420104254 21.39889954308514 31.918237981852116 14.298378274020207 3 12.562906235922517 21.72195765493275 52.25191453761503 13.463221571529699 4 11.125876826050582 2.9823347705772574 69.27891112684213 16.61287727653002 5 25.547171632666192 3.586298989638973 52.515445009331366 18.351084368363473 6 13.96647145890984 18.811860480082373 55.88438766973422 11.33728039127357 7 53.0705000321771 1.5359740009009588 42.526224338760535 2.8673016281614 8 51.01567024905077 14.726172855396099 30.141096595662525 4.117060299890598 9 47.861831520689876 3.082244674689491 28.938477379496753 20.11744642512388 10 31.47161979535363 18.745253877340883 35.49456206963125 14.288564257674238 11 27.584464894780876 15.615387090546367 41.64795031855332 15.15219769611944 12 20.29329429178197 14.307548748310703 44.42242100521269 20.97673595469464 13 19.0657378209666 15.402535555698565 52.57481176394877 12.956914859386062 14 16.26713430722698 22.50386125233284 42.65702426153549 18.57198017890469 15 12.28698757963833 15.223791749790848 54.77266876890404 17.716551901666776 16 14.60084304009267 17.86408391788403 41.84230001930626 25.692773022717034 17 15.085108436836347 18.75152841238175 48.37425188236051 17.789111268421394 18 15.651264560139005 16.854688203874126 46.04511229808868 21.448934937898194 19 15.232801338567475 20.089935002252396 42.378370551515545 22.298893107664586 20 18.374090996846643 19.031469206512647 49.33473840015445 13.259701396486259 21 18.062616641997558 25.34686916790012 42.271864341334705 14.318649848767617 22 15.51676427054508 15.25162494369007 47.06367848638909 22.167932299375764 23 16.543696505566636 24.176909711049618 44.543406911641675 14.735986871742067 24 18.593377952249178 17.560171182186757 42.0528991569599 21.79355170860416 25 14.452828367333806 28.45163781453118 39.69431752365017 17.401216294484843 26 15.424576871098527 16.43735118089967 45.742647532016214 22.395424415985584 27 18.39371902953858 19.443336122015573 40.73074200398996 21.432202844455887 28 12.15473968723856 20.946167707059658 46.77311924834288 20.1259733573589 29 18.212240169895104 19.8196473389536 40.609756097560975 21.358356393590324 30 14.989381556084691 22.00189844906365 43.54688203874123 19.461837956110433 31 19.321706673531118 16.601937061586973 37.94018276594375 26.136173498938152 32 20.39336508140807 21.908423965506145 38.255196602097946 19.443014350987838 33 16.581826372353433 17.82595405109724 38.28866078898256 27.303558787566768 34 19.24222922968016 23.33563935903211 36.38120213655963 21.040929274728104 35 15.496975352339277 21.651328914344553 38.46772636591801 24.38396936739816 36 16.83747345389021 29.1109466503636 31.814788596434777 22.23679129931141 37 16.84535684406976 21.554475834995817 35.328689104833 26.271478216101425 38 18.41205997811957 22.919589420168606 34.61274856811893 24.055602033592898 39 19.90362957719287 23.050711113971296 30.82325117446425 26.222408134371584 40 18.51036102709312 20.621661625587233 41.448291395842716 19.41968595147693 41 17.621951219512194 28.289626102065768 29.60277366625909 24.485649012162945 42 17.915728167835766 21.432524615483622 40.62648819100328 20.02525902567733 43 20.085108436836347 25.28074522170024 31.219029538580344 23.41511680288307 44 21.334867108565543 20.595437286826694 33.637299697535234 24.432395907072525 45 18.12922324473904 19.933071626230774 34.22227942596049 27.715425703069695 46 24.143445524165006 24.698017890469142 30.441148079026963 20.71738850633889 47 15.614582662977025 21.12088937512066 43.41318617671665 19.85134178518566 48 20.12516892978956 23.850473003410773 31.39519917626617 24.629158890533496 49 18.01579895746187 19.559495463028508 40.3352854109016 22.08942016860802 50 19.664231932556792 20.781742711886224 35.90610721410644 23.647918141450543 51 19.097271381684795 20.12532981530343 33.14708153677843 27.63031726623335 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 57.0 1 848.5 2 1640.0 3 17448.0 4 33256.0 5 24680.0 6 16104.0 7 15132.0 8 14160.0 9 13896.5 10 13633.0 11 12921.5 12 12210.0 13 11457.5 14 10705.0 15 9864.5 16 9024.0 17 8422.0 18 7820.0 19 7167.5 20 6515.0 21 6234.0 22 5953.0 23 5713.5 24 5474.0 25 5339.5 26 5525.0 27 5845.0 28 6117.0 29 6389.0 30 7216.0 31 8043.0 32 8775.5 33 9508.0 34 10667.0 35 11826.0 36 12743.0 37 13660.0 38 14253.0 39 14846.0 40 15751.0 41 16656.0 42 17963.0 43 19270.0 44 21944.0 45 24618.0 46 68653.5 47 112689.0 48 76501.0 49 40313.0 50 37817.0 51 35321.0 52 31195.0 53 27069.0 54 26638.0 55 26207.0 56 25834.5 57 25462.0 58 24004.0 59 22546.0 60 20091.5 61 17637.0 62 15396.5 63 13156.0 64 11261.0 65 9366.0 66 8042.5 67 6719.0 68 5535.5 69 4352.0 70 3695.5 71 3039.0 72 2592.0 73 2145.0 74 1791.0 75 1151.5 76 866.0 77 660.0 78 454.0 79 330.0 80 206.0 81 150.5 82 95.0 83 67.0 84 39.0 85 25.0 86 11.0 87 8.5 88 6.0 89 4.0 90 2.0 91 3.0 92 4.0 93 2.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 621560.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.48689695039954 #Duplication Level Percentage of deduplicated Percentage of total 1 82.61812438567814 33.449514882382424 2 5.460573617449286 4.421633626794794 3 2.208122688544156 2.6820010723477927 4 1.496370081076338 2.4233352508879484 5 1.1659366458542149 2.360257841569704 6 1.0307007875730332 2.5037925943899024 7 0.8769827629405506 2.485441752531552 8 0.7824610748465786 2.5343536724009827 9 0.6616641180364777 2.4109854266447885 >10 3.5777491715454324 21.84818098493125 >50 0.07069993807422113 2.036222287500322 >100 0.044187461285492995 3.222825945823857 >500 8.034083870089634E-4 0.179063956719422 >1k 0.0040170419350448175 4.811469659934041 >5k 0.0 0.0 >10k+ 0.0016068167740179269 12.630921045141207 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCG 23104 3.717098912413926 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGC 20513 3.30024454598108 No Hit GAATCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTC 19881 3.198564901216294 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14165 2.2789433039449127 No Hit GAACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCT 4717 0.7588969689169187 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCCTCTAT 4706 0.7571272282643671 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTC 4271 0.687142029731643 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCCTCTATCGTA 3856 0.6203745414762855 No Hit GCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 3844 0.6184439153098655 TruSeq Adapter, Index 16 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCT 3629 0.5838535298281743 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACCCTCTATCGT 1440 0.23167513997039707 No Hit GAATGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTT 1073 0.1726301563807195 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATG 1037 0.16683827788145955 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTAT 1011 0.16265525452088292 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.6088551386833128E-4 0.0 0.0 0.09041765879400218 0.0 2 1.6088551386833128E-4 0.0 0.0 0.8150460132569664 0.0 3 1.6088551386833128E-4 0.0 0.0 0.9279876439925349 0.0 4 1.6088551386833128E-4 0.0 0.0 1.8492180964026 0.0 5 1.6088551386833128E-4 0.0 0.0 5.586427698050068 0.0 6 1.6088551386833128E-4 0.0 0.0 5.869425316944462 0.0 7 1.6088551386833128E-4 0.0 0.0 6.60628097046142 0.0 8 1.6088551386833128E-4 0.0 0.0 7.500160885513869 0.0 9 1.6088551386833128E-4 0.0 0.0 7.626777784928245 0.0 10 1.6088551386833128E-4 0.0 0.0 11.994175944397966 0.0 11 1.6088551386833128E-4 0.0 0.0 12.198822318038484 0.0 12 1.6088551386833128E-4 0.0 0.0 16.174625136752688 0.0 13 1.6088551386833128E-4 0.0 0.0 16.47805521590836 0.0 14 1.6088551386833128E-4 0.0 0.0 16.71133921101744 0.0 15 1.6088551386833128E-4 0.0 0.0 17.52815496492696 0.0 16 1.6088551386833128E-4 0.0 0.0 17.885964347770127 0.0 17 1.6088551386833128E-4 0.0 0.0 18.04749340369393 0.0 18 1.6088551386833128E-4 0.0 0.0 18.162687431623656 0.0 19 1.6088551386833128E-4 0.0 0.0 19.202168736726946 0.0 20 1.6088551386833128E-4 0.0 0.0 19.409228393075487 0.0 21 1.6088551386833128E-4 0.0 0.0 19.539545659308835 0.0 22 1.6088551386833128E-4 0.0 0.0 19.84651521976961 0.0 23 1.6088551386833128E-4 0.0 0.0 19.974258317781068 0.0 24 1.6088551386833128E-4 0.0 0.0 20.09830104897355 0.0 25 1.6088551386833128E-4 0.0 0.0 20.191936418044918 0.0 26 1.6088551386833128E-4 0.0 0.0 20.329493532402342 0.0 27 1.6088551386833128E-4 0.0 0.0 20.544114807902698 0.0 28 1.6088551386833128E-4 0.0 0.0 20.664618057790076 0.0 29 1.6088551386833128E-4 0.0 0.0 20.785121307677457 0.0 30 1.6088551386833128E-4 0.0 0.0 20.933618636977926 0.0 31 1.6088551386833128E-4 0.0 0.0 21.056213398545594 0.0 32 1.6088551386833128E-4 0.0 0.0 21.213237660081088 0.0 33 1.6088551386833128E-4 0.0 0.0 21.356264881910032 0.0 34 1.6088551386833128E-4 0.0 0.0 21.548040414441083 0.0 35 1.6088551386833128E-4 0.0 0.0 21.710534783448097 0.0 36 1.6088551386833128E-4 0.0 0.0 21.852757577707703 0.0 37 1.6088551386833128E-4 0.0 0.0 22.011551579895745 0.0 38 1.6088551386833128E-4 0.0 0.0 22.18562970590128 0.0 39 1.6088551386833128E-4 0.0 0.0 22.437737306132956 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACGG 20 7.030784E-4 45.0 27 CGATATC 20 7.030784E-4 45.0 10 CGTTAGG 25 3.8887323E-5 44.999996 2 GCGATAT 25 3.8887323E-5 44.999996 9 CCTTGCG 25 3.8887323E-5 44.999996 1 CGTTTTT 12570 0.0 44.19451 1 GTATGAT 150 0.0 43.500004 1 TGATACC 2665 0.0 42.973736 4 GATACCT 2680 0.0 42.649254 5 ATACCTG 2690 0.0 42.490707 6 CGATGAA 670 0.0 42.313435 19 TACGGCT 2460 0.0 42.07317 7 ACGGCTG 2480 0.0 41.91532 8 CGGCTGT 2475 0.0 41.909092 9 CCGATGA 670 0.0 41.641792 18 TACCTGT 2780 0.0 41.43885 7 GAATCTG 2320 0.0 40.732758 1 GAATGAT 9005 0.0 40.577454 1 ATGATAC 8645 0.0 40.47137 3 AATCTGT 2345 0.0 40.394455 2 >>END_MODULE