##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933407.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 417839 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.07185542756899 31.0 25.0 31.0 16.0 33.0 2 28.151378880382158 31.0 28.0 33.0 16.0 34.0 3 28.353404062330227 31.0 28.0 33.0 16.0 34.0 4 31.52775351271662 35.0 28.0 35.0 19.0 37.0 5 33.45299505311855 35.0 33.0 37.0 28.0 37.0 6 32.09423246752936 35.0 32.0 37.0 17.0 37.0 7 31.76241327401224 33.0 30.0 35.0 25.0 37.0 8 32.40983728182386 35.0 32.0 35.0 25.0 37.0 9 32.590933349926644 34.0 31.0 37.0 25.0 39.0 10 31.279296571167365 35.0 27.0 38.0 15.0 39.0 11 31.86210956851802 35.0 27.0 39.0 15.0 39.0 12 32.76833421485309 35.0 31.0 39.0 22.0 39.0 13 32.95165362735408 35.0 31.0 39.0 23.0 39.0 14 33.20649341014123 36.0 31.0 39.0 19.0 41.0 15 33.63134843803475 36.0 31.0 39.0 23.0 41.0 16 33.85029161949937 36.0 32.0 40.0 24.0 41.0 17 31.754668664246278 34.0 27.0 39.0 17.0 41.0 18 32.541253927948325 35.0 30.0 39.0 20.0 39.0 19 32.36946287924296 35.0 30.0 37.0 18.0 39.0 20 32.080992918325 34.0 30.0 36.0 23.0 39.0 21 32.63896381142019 35.0 31.0 37.0 23.0 39.0 22 33.07193440535709 35.0 31.0 38.0 25.0 39.0 23 33.9688779649578 35.0 32.0 38.0 27.0 40.0 24 32.42730094605817 35.0 31.0 37.0 22.0 39.0 25 31.56319300017471 35.0 30.0 37.0 18.0 39.0 26 31.013182110813016 33.0 27.0 37.0 20.0 39.0 27 32.550233463128144 35.0 30.0 38.0 22.0 39.0 28 32.40126220864974 35.0 31.0 38.0 21.0 39.0 29 32.607604843013696 35.0 31.0 38.0 21.0 40.0 30 31.736570784440897 35.0 30.0 38.0 18.0 40.0 31 31.908570047314875 35.0 30.0 37.0 20.0 40.0 32 31.832100402308065 35.0 30.0 38.0 18.0 40.0 33 31.83080803850287 35.0 30.0 38.0 16.0 40.0 34 31.232828912571588 35.0 30.0 38.0 12.0 40.0 35 30.777801976359317 35.0 29.0 38.0 10.0 40.0 36 30.287206316308435 35.0 27.0 38.0 9.0 40.0 37 30.525427257867264 35.0 28.0 38.0 8.0 40.0 38 30.337831078477596 35.0 26.0 38.0 8.0 40.0 39 29.98124397196049 35.0 25.0 38.0 8.0 40.0 40 29.559945337797572 34.0 24.0 38.0 8.0 40.0 41 28.923286241829988 33.0 23.0 37.0 8.0 40.0 42 29.609555355053022 34.0 24.0 38.0 8.0 40.0 43 29.468733172346287 34.0 23.0 38.0 7.0 40.0 44 29.67060518525078 35.0 24.0 38.0 7.0 40.0 45 29.965474740270775 35.0 25.0 38.0 7.0 40.0 46 29.6726346750782 35.0 24.0 38.0 7.0 40.0 47 29.66618482238374 34.0 24.0 38.0 7.0 40.0 48 29.524386187024188 34.0 24.0 38.0 7.0 40.0 49 29.398926380735162 34.0 24.0 37.0 7.0 40.0 50 29.56094332984714 34.0 24.0 38.0 7.0 40.0 51 27.791675741134743 32.0 22.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 16.0 10 23.0 11 29.0 12 38.0 13 55.0 14 97.0 15 195.0 16 415.0 17 788.0 18 1360.0 19 2204.0 20 3265.0 21 4751.0 22 6483.0 23 8805.0 24 11984.0 25 15943.0 26 20220.0 27 22470.0 28 23091.0 29 24773.0 30 27822.0 31 32026.0 32 35991.0 33 39684.0 34 42488.0 35 43024.0 36 30997.0 37 15582.0 38 3158.0 39 55.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.29759548534244 2.5622309071197282 33.57896223186443 36.56121137567341 2 35.97869035681207 15.37817197533021 34.060726739246455 14.582410928611258 3 13.31493709299515 15.339161734543689 57.46639255789909 13.87950861456207 4 11.821538918100034 3.0188661182895804 68.0058587159169 17.15373624769349 5 21.72296027895912 3.4807665153324603 56.987260643453574 17.80901256225484 6 14.454849834505634 13.71269795303933 59.21108369491599 12.621368517539052 7 53.360983536721086 1.5546657923267095 41.92619645365799 3.1581542172942205 8 53.54023918303461 10.657214860269146 31.21704771455034 4.585498242145898 9 49.26658354055031 3.085877574855387 31.385533662487227 16.262005222107078 10 29.096613767503754 19.37827727904767 37.197820213048566 14.327288740400009 11 24.953630465322767 16.32159755312453 44.327121211758595 14.397650769794106 12 19.860281113060292 14.956478452226815 46.30252322066633 18.88071721404656 13 17.79441363778872 15.897750090345802 53.17789866431808 13.129937607547404 14 15.566043380345059 19.17125974358545 46.25705116085383 19.005645715215667 15 12.22767621021494 15.782155327769786 54.533923353253286 17.456245108761987 16 14.414882287196743 16.073655163831045 45.12001033891045 24.39145221006177 17 15.00673704465117 17.152060961279343 49.77371667077511 18.06748532329438 18 15.386787734031529 15.306852639413746 48.36791204267673 20.938447583878002 19 15.558624254796705 18.96639614779855 44.68036731851263 20.794612278892107 20 17.713281910017972 18.03876612762332 50.53980121530063 13.708150747058076 21 18.260382587551664 22.18031347002075 44.21248375570495 15.346820186722637 22 15.74051249404675 15.600506415150333 48.07593355335428 20.583047537448635 23 16.389566316212704 22.408870402236268 45.37202128092399 15.829542000627036 24 17.184130729778698 16.805037346920702 45.024519013304165 20.986312909996435 25 14.689150605855367 23.59808442964874 42.73871036451839 18.974054599977503 26 15.278372770373277 17.298289532571157 47.06023133312113 20.36310636393443 27 16.047089907835314 18.852715998267275 44.08516198822991 21.015032105667494 28 12.599350467524573 19.71524917492144 48.292763480670786 19.392636876883202 29 17.14153058953329 18.09093933309241 43.54571976287517 21.221810314499127 30 14.76358118796953 20.328882655759756 45.70564260396947 19.201893552301243 31 17.7980035372476 16.878989275773684 41.419063323433186 23.90394386354553 32 18.604294955712607 20.90853175505398 41.722529491024055 18.764643798209356 33 15.821644221817493 18.01435481130292 40.90451106766003 25.259489899219556 34 17.87554536555946 22.756851323117278 39.401539827541235 19.966063483782033 35 14.888031035877455 22.010152235669718 39.51689526348666 23.584921464966172 36 16.889758974150332 25.832437852857197 34.9299610615572 22.347842111435266 37 16.51617010379596 21.45898300541596 37.0745669982936 24.95027989249448 38 17.923410691677898 22.321994835331314 37.452224421368044 22.302370051622756 39 18.58371286548168 22.421794040288244 34.487446121592285 24.507046972637784 40 18.390097621332618 20.424852634627214 41.777335289429665 19.40771445461051 41 17.082177585146432 26.06889256388226 33.68402662269438 23.16490322827692 42 17.542881349036353 21.366602926007385 40.743444245271505 20.347071479684757 43 18.915419575482424 23.93984285813435 34.38286038402351 22.76187718235971 44 20.337019761199887 20.544515949923294 35.77263012787222 23.345834161004596 45 17.776464140494305 19.953618498991236 36.50281567780891 25.76710168270554 46 21.18567199327971 23.616273253573745 33.99299730278887 21.20505745035767 47 15.649568374421726 20.52513049284533 43.61081660639624 20.214484526336697 48 19.13081354301537 22.566347325165914 34.78516845004894 23.517670681769772 49 17.302597411921816 19.490521468795396 40.97654838346828 22.23033273581451 50 18.688298603050455 20.542122683617375 37.42565916537231 23.34391954795986 51 18.439159580604013 19.712616581984925 36.082558114489075 25.765665722921987 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 64.0 1 403.0 2 742.0 3 16904.5 4 33067.0 5 22356.5 6 11646.0 7 10785.5 8 9925.0 9 9864.5 10 9804.0 11 9208.5 12 8613.0 13 8071.0 14 7529.0 15 6846.0 16 6163.0 17 5658.0 18 5153.0 19 4677.5 20 4202.0 21 4022.5 22 3843.0 23 3641.5 24 3440.0 25 3361.5 26 3452.5 27 3622.0 28 3845.0 29 4068.0 30 4552.0 31 5036.0 32 5622.5 33 6209.0 34 6938.0 35 7667.0 36 8421.0 37 9175.0 38 9523.5 39 9872.0 40 10729.5 41 11587.0 42 12532.5 43 13478.0 44 15218.5 45 16959.0 46 34895.0 47 52831.0 48 42340.5 49 31850.0 50 29875.0 51 27900.0 52 23998.5 53 20097.0 54 18920.5 55 17744.0 56 16927.0 57 16110.0 58 15248.5 59 14387.0 60 12939.5 61 11492.0 62 10209.0 63 8926.0 64 7743.5 65 6561.0 66 5758.5 67 4956.0 68 4206.5 69 3457.0 70 2841.0 71 2225.0 72 1909.5 73 1594.0 74 1371.0 75 931.0 76 714.0 77 528.0 78 342.0 79 259.5 80 177.0 81 141.0 82 105.0 83 77.0 84 49.0 85 32.5 86 16.0 87 10.5 88 5.0 89 3.5 90 2.0 91 3.0 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 417839.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.660418299705015 #Duplication Level Percentage of deduplicated Percentage of total 1 80.22701834652258 35.02745179947285 2 6.809859337638503 5.946426144868984 3 3.1028985759456016 4.06421549302032 4 1.9571035362244928 3.4179183618957305 5 1.504686182328578 3.2847614065125965 6 1.2219543789741913 3.2010623597501677 7 0.9417418827588999 2.8781791172123734 8 0.7676923583224283 2.68142155918754 9 0.631513245432341 2.481491921164226 >10 2.7279427932229985 17.296813832103048 >50 0.06500190658860056 1.9755977791283161 >100 0.034742398349079606 3.0826665036553282 >500 0.0028018063184741615 0.8633912770952107 >1k 0.0028018063184741615 2.365824213519605 >5k 0.0011207225273896647 3.5754038320967436 >10k+ 0.0011207225273896647 7.857374399317026 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21216 5.077553794643391 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCG 10900 2.6086602734546083 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGC 8477 2.0287718475297902 No Hit GAATCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTC 6137 1.468747531944122 No Hit GCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 2357 0.564092868305735 TruSeq Adapter, Index 16 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCCTCTAT 2286 0.5471006775336912 No Hit GAACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCT 2024 0.4843971003185437 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTC 1607 0.38459789536161054 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCCTCTATCGTA 1396 0.3340999763066636 No Hit GAATGACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCT 993 0.23765134417802072 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCACCCTCTATCGTATGCCG 915 0.21898386699183178 No Hit GAATCTTTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTC 552 0.13210830008687557 No Hit CTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGCT 535 0.12803974736680876 TruSeq Adapter, Index 13 (95% over 22bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACCCTCTATCGT 534 0.12780042073621659 No Hit GAATGATACGGCTGCCTCCTATACACATCTGACGCACCCTCTATCGTATGC 478 0.1143981294230553 No Hit GAATGACTCTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCT 459 0.10985092344180412 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16226345554148847 0.0 2 0.0 0.0 0.0 0.979563899013735 0.0 3 0.0 0.0 0.0 1.1949578665466842 0.0 4 0.0 0.0 0.0 2.052704510589007 0.0 5 0.0 0.0 0.0 4.022841333623716 0.0 6 0.0 0.0 0.0 4.373933500702424 0.0 7 0.0 0.0 0.0 4.847800229274912 0.0 8 0.0 0.0 0.0 5.53371035255206 0.0 9 0.0 0.0 0.0 5.708658119514933 0.0 10 0.0 0.0 0.0 9.09177936956579 0.0 11 0.0 0.0 0.0 9.65754752428567 0.0 12 0.0 0.0 0.0 12.482319745165004 0.0 13 0.0 0.0 0.0 12.764007189371982 0.0 14 0.0 0.0 0.0 12.941826875901961 0.0 15 0.0 0.0 0.0 13.509030990405396 0.0 16 0.0 0.0 0.0 13.829250022137714 0.0 17 0.0 0.0 0.0 14.124100431027262 0.0 18 0.0 0.0 0.0 14.389035011092789 0.0 19 0.0 0.0 0.0 15.302066106801902 0.0 20 0.0 0.0 0.0 15.589497390143093 0.0 21 0.0 0.0 0.0 15.888416351752708 0.0 22 0.0 0.0 0.0 16.32159755312453 0.0 23 0.0 0.0 0.0 16.620516514734145 0.0 24 0.0 0.0 0.0 16.859364492065126 0.0 25 0.0 0.0 0.0 17.082656238407615 0.0 26 0.0 0.0 0.0 17.281297341799114 0.0 27 0.0 0.0 0.0 17.49381938976496 0.0 28 0.0 0.0 0.0 17.67834022195152 0.0 29 0.0 0.0 0.0 17.890144290025585 0.0 30 0.0 0.0 0.0 18.136650719535513 0.0 31 0.0 0.0 0.0 18.336727782710565 0.0 32 0.0 0.0 0.0 18.55044646382937 0.0 33 0.0 0.0 0.0 18.757224672661 0.0 34 2.3932663059216588E-4 0.0 0.0 18.97788382606698 0.0 35 2.3932663059216588E-4 0.0 0.0 19.225826215360463 0.0 36 2.3932663059216588E-4 0.0 0.0 19.414415600267088 0.0 37 2.3932663059216588E-4 0.0 0.0 19.61090276398326 0.0 38 2.3932663059216588E-4 0.0 0.0 19.847118148377724 0.0 39 2.3932663059216588E-4 0.0 0.0 20.174277652397215 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGTC 40 6.7975634E-9 45.0 17 CGCGGGC 45 3.8380676E-10 45.0 4 ACGTCGG 20 7.028126E-4 45.0 43 CCTGATC 20 7.028126E-4 45.0 31 CTTACGG 20 7.028126E-4 45.0 2 CGTTGAT 30 2.1621727E-6 44.999996 25 CGTTTTT 10340 0.0 44.347195 1 ACGGCTG 1140 0.0 43.618423 8 CGGGATG 150 0.0 43.5 6 CGATGAA 145 0.0 43.448273 19 TACGGCT 1150 0.0 43.23913 7 TGATCCG 110 0.0 42.954544 4 GAATGAT 4160 0.0 41.80889 1 GATACCT 1365 0.0 41.538464 5 ACGGCGA 1470 0.0 41.47959 8 ATACGGC 2670 0.0 41.376404 6 ATGATAC 4000 0.0 41.343754 3 GGCGACT 245 0.0 41.32653 10 TGATACG 2685 0.0 41.312847 4 CGACCAC 840 0.0 41.25 12 >>END_MODULE