SRR2933406.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933406.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	516258
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17557	3.400818970359781	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCG	14924	2.8908026606851616	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGC	13093	2.5361350332585646	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTC	11066	2.1435018924646205	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTACGAGT	3352	0.6492877592211647	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTC	2895	0.5607661285636252	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTACGAGTCGTA	2863	0.5545676774016093	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCT	2800	0.5423644766763905	No Hit
GCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	2639	0.511178519267498	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCT	2605	0.5045926649078561	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTACGAGTCGT	1150	0.22275683863494608	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTAT	798	0.1545738758527713	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATG	718	0.13907774794773156	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTT	634	0.12280681364743985	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	522	0.10111223458038424	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAAGC	20	7.029671E-4	45.000004	43
GTAGGCG	20	7.029671E-4	45.000004	19
AATGCGA	30	2.1631695E-6	45.000004	25
CGAGGCA	20	7.029671E-4	45.000004	32
AACGAGC	30	2.1631695E-6	45.000004	15
GATACGT	25	3.8878105E-5	45.0	5
CGATTAA	25	3.8878105E-5	45.0	19
TGCGAAT	25	3.8878105E-5	45.0	27
CGAATAT	25	3.8878105E-5	45.0	14
CGTTTTT	13315	0.0	44.44236	1
CACCGGT	140	0.0	43.392857	16
TACGGCT	1790	0.0	42.988827	7
GATACCT	1910	0.0	42.76178	5
ACGGCTG	1800	0.0	42.5	8
TGATACC	1930	0.0	42.318653	4
CGGCTGT	1835	0.0	42.179836	9
ATACCTG	1945	0.0	42.107967	6
ACCGGTC	75	0.0	42.0	17
TTGTTCG	65	0.0	41.538464	1
GCGCGAC	60	3.6379788E-12	41.250004	9