##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933406.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 516258 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.423361962429638 31.0 28.0 31.0 25.0 34.0 2 28.606016759062328 31.0 27.0 33.0 16.0 34.0 3 28.59582611794878 31.0 27.0 33.0 16.0 34.0 4 33.124354489421954 35.0 32.0 37.0 28.0 37.0 5 34.27291780466356 35.0 33.0 37.0 30.0 37.0 6 33.584581740137686 35.0 33.0 37.0 28.0 37.0 7 33.65770990473755 35.0 33.0 37.0 29.0 37.0 8 33.51387290850699 35.0 33.0 37.0 28.0 37.0 9 34.70493822856014 37.0 34.0 39.0 28.0 39.0 10 34.6913674945473 37.0 33.0 39.0 27.0 39.0 11 34.87268962418016 37.0 34.0 39.0 27.0 39.0 12 34.969222752964605 37.0 34.0 39.0 27.0 39.0 13 34.97987634089932 37.0 34.0 39.0 27.0 39.0 14 35.66954507242503 38.0 34.0 40.0 27.0 41.0 15 36.01508548051556 38.0 34.0 40.0 27.0 41.0 16 36.069974702571194 38.0 34.0 40.0 29.0 41.0 17 35.3156658105056 37.0 33.0 40.0 27.0 41.0 18 35.19080382289476 37.0 33.0 39.0 27.0 40.0 19 34.55482530052803 37.0 33.0 38.0 27.0 40.0 20 33.79235188607247 35.0 32.0 38.0 27.0 40.0 21 34.175193411046415 35.0 33.0 38.0 27.0 40.0 22 34.78468130275947 35.0 33.0 39.0 29.0 40.0 23 35.12129400416071 35.0 34.0 39.0 30.0 40.0 24 34.6205773082451 35.0 33.0 39.0 27.0 40.0 25 33.489685389863205 35.0 32.0 38.0 24.0 40.0 26 33.60583467955944 35.0 32.0 38.0 24.0 40.0 27 34.36202054011754 35.0 33.0 38.0 27.0 40.0 28 34.10933680446598 35.0 33.0 39.0 25.0 40.0 29 34.100552436959816 35.0 33.0 39.0 25.0 40.0 30 33.39690426104777 35.0 33.0 39.0 22.0 40.0 31 33.2794223043517 35.0 33.0 39.0 22.0 40.0 32 32.73962049982761 35.0 32.0 39.0 18.0 40.0 33 32.195890426879586 35.0 31.0 39.0 15.0 40.0 34 31.59045864664567 35.0 30.0 39.0 10.0 40.0 35 31.234222036268687 35.0 29.0 39.0 8.0 41.0 36 30.54093689589314 35.0 25.0 39.0 7.0 40.0 37 30.46652448969314 35.0 25.0 39.0 7.0 40.0 38 30.205292702485966 35.0 24.0 39.0 7.0 40.0 39 29.86594493450949 35.0 23.0 39.0 7.0 40.0 40 29.625408226119497 35.0 22.0 39.0 7.0 40.0 41 29.094844050842795 35.0 21.0 39.0 7.0 40.0 42 29.256947107841427 35.0 21.0 39.0 7.0 40.0 43 29.174341124011637 35.0 21.0 39.0 7.0 40.0 44 29.31493942951005 35.0 21.0 39.0 7.0 40.0 45 29.405165634237147 35.0 20.0 39.0 7.0 40.0 46 29.219797078205083 35.0 20.0 39.0 7.0 40.0 47 29.052915402763734 35.0 20.0 39.0 7.0 40.0 48 28.943235746467852 35.0 20.0 38.0 7.0 40.0 49 29.099953899019482 35.0 20.0 39.0 7.0 40.0 50 28.998518182769082 35.0 20.0 39.0 7.0 40.0 51 27.81570648784135 33.0 19.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 16.0 9 21.0 10 32.0 11 29.0 12 47.0 13 57.0 14 81.0 15 136.0 16 295.0 17 539.0 18 1056.0 19 1922.0 20 3110.0 21 4475.0 22 6558.0 23 9493.0 24 13668.0 25 19761.0 26 25316.0 27 27232.0 28 25444.0 29 23984.0 30 24366.0 31 26735.0 32 31037.0 33 35995.0 34 39944.0 35 47351.0 36 50581.0 37 51434.0 38 39518.0 39 6022.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.68042722824634 2.4516811361760977 31.3267784712295 37.54111316434806 2 37.77316767972603 17.33861751294895 31.46140108240453 13.426813724920486 3 12.590216519647154 17.480988188076505 56.65713654800507 13.271658744271274 4 11.169415292353824 2.8634907352525287 70.32200953786672 15.645084434526924 5 22.578439462439324 3.325662750020339 57.535767000220815 16.56013078731952 6 13.469815479856969 15.729344630010575 60.36884658445971 10.431993305672744 7 51.090152598119545 1.2414335467924953 44.92133778072204 2.747076074365918 8 50.21597728267649 11.96765958106218 34.37719124933657 3.4391718869247545 9 46.99317008162585 3.1135594993201074 33.838894506235256 16.054375912818784 10 29.093592738514463 19.048421525671273 39.68810168559131 12.16988405022295 11 25.69587299373569 15.871715305138128 45.79803121694967 12.634380484176516 12 19.201058385535912 14.939429510051175 48.01068458019053 17.848827524222386 13 19.05849400880955 15.605181905171445 54.200612871858645 11.135711214160361 14 15.135261826451115 21.19366673252521 47.917126707963845 15.753944733059827 15 11.742190920043855 15.531381596023694 57.43542957203569 15.290997911896763 16 14.831150316314712 17.884856021601603 45.9847595582054 21.29923410387829 17 15.4703655923976 18.120203464159392 51.69895672318879 14.710474220254213 18 15.818447365464555 16.163042509752877 50.001743314389316 18.016766810393253 19 14.933424760487974 19.464686261520402 46.90736027335169 18.69452870463993 20 16.31529196641989 19.601439590282375 52.448969313792716 11.634299129505015 21 16.357518914961126 23.687187414044917 47.75054333298467 12.20475033800929 22 14.034455640396857 15.298358572651658 51.74040886533477 18.92677692161671 23 14.188448411453189 22.806813647439846 49.71312793215795 13.291610008949014 24 15.588136164475902 18.794091326429808 46.95520456825851 18.662567940835785 25 13.915135455528048 26.370923065598983 44.344494419456936 15.369447059416027 26 14.184186976279303 17.25958726063325 49.36000991752186 19.19621584556559 27 16.469478439075036 19.34769049583735 46.388046286934056 17.79478477815356 28 11.196533516187642 20.637549442333096 50.893351773725534 17.27256526775372 29 17.420165886049226 20.707282017905776 44.96317732606565 16.90937476997935 30 17.535224635744143 21.521797240914424 47.6108844802405 13.332093643100931 31 18.003788803272784 18.449496182141488 45.80558557930337 17.74112943528236 32 19.783131689968968 24.91564295371694 41.3750489096537 13.92617644666039 33 18.335405940440634 18.432450441445944 39.457596783003844 23.77454683510958 34 20.3409922945504 25.30943830410376 40.083834051966264 14.265735349379574 35 19.266142122737083 26.26245017026371 36.79710532330734 17.674302383691874 36 20.76558619914849 25.499653274138122 37.11787517094166 16.61688535577173 37 20.475227502527808 27.767511593040688 36.18675158544759 15.57050931898392 38 19.723471597534566 23.823165936411637 35.84932340031535 20.60403906573845 39 23.284288088513883 26.02555311491541 33.57778475103533 17.112374045535372 40 19.92879529227634 25.518054926025357 35.06599413471559 19.48715564698271 41 25.116511511686017 24.036237695105935 32.758620689655174 18.088630103552873 42 17.94877754920989 26.10632668162043 38.77092461521177 17.173971153957904 43 22.75722603814372 22.679357995420894 33.810032968012116 20.75338299842327 44 23.391017669459842 22.42386558658655 34.53137772199172 19.65373902196189 45 18.275358444808603 22.10948789171306 35.51518814236292 24.09996552111541 46 22.563718140929534 25.499459572539312 32.626903602462335 19.30991868406882 47 15.942416388704872 22.795191551511067 42.33561513816735 18.92677692161671 48 20.752414490429206 25.46556179274704 32.74176865055844 21.040255066265317 49 18.423733869499358 22.61253094383041 38.790682178290695 20.173053008379533 50 19.88211320696241 21.63298195863309 35.78288375192249 22.702021082482016 51 18.7656171914043 22.316748602442964 34.180003021744945 24.737631184407796 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 71.0 1 772.5 2 1474.0 3 17945.0 4 34416.0 5 25139.0 6 15862.0 7 14877.0 8 13892.0 9 13587.5 10 13283.0 11 12890.5 12 12498.0 13 11696.5 14 10895.0 15 10183.0 16 9471.0 17 8873.5 18 8276.0 19 7747.5 20 7219.0 21 6962.0 22 6705.0 23 6506.5 24 6308.0 25 6445.0 26 6820.5 27 7059.0 28 7383.0 29 7707.0 30 8286.5 31 8866.0 32 9435.5 33 10005.0 34 10727.0 35 11449.0 36 12027.5 37 12606.0 38 13302.0 39 13998.0 40 14614.5 41 15231.0 42 16096.0 43 16961.0 44 18641.5 45 20322.0 46 48450.0 47 76578.0 48 54442.5 49 32307.0 50 29702.0 51 27097.0 52 24196.5 53 21296.0 54 20748.5 55 20201.0 56 19286.5 57 18372.0 58 16544.0 59 14716.0 60 12695.5 61 10675.0 62 9106.0 63 7537.0 64 6529.0 65 5521.0 66 4574.5 67 3628.0 68 3050.5 69 2473.0 70 2045.0 71 1617.0 72 1359.5 73 1102.0 74 965.0 75 694.5 76 561.0 77 452.0 78 343.0 79 240.5 80 138.0 81 103.0 82 68.0 83 47.0 84 26.0 85 18.0 86 10.0 87 7.5 88 5.0 89 3.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 516258.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.40711597264668 #Duplication Level Percentage of deduplicated Percentage of total 1 83.63851953131592 38.81422475670252 2 5.44349254810954 5.052335799527149 3 2.4417353029612006 3.3994168013707804 4 1.689164185411067 3.135569529968506 5 1.2926210846043749 2.9993408290961785 6 1.0548831554935076 2.937245096074722 7 0.8539517867964761 2.7740607723439044 8 0.7031807446523248 2.610607229344999 9 0.5524144079891876 2.307236354686367 >10 2.2183552608135892 15.351259648687634 >50 0.06785207806977794 2.1820730707223213 >100 0.037508291602816414 3.256583194396449 >500 0.001685765914733322 0.5225866491758642 >1k 0.0029500903507833133 3.579875009923285 >5k 0.0 0.0 >10k+ 0.001685765914733322 11.077585257979395 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17557 3.400818970359781 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCG 14924 2.8908026606851616 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGC 13093 2.5361350332585646 No Hit GAATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTC 11066 2.1435018924646205 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTACGAGT 3352 0.6492877592211647 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTC 2895 0.5607661285636252 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTACGAGTCGTA 2863 0.5545676774016093 No Hit GAACTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCT 2800 0.5423644766763905 No Hit GCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC 2639 0.511178519267498 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCT 2605 0.5045926649078561 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTACGAGTCGT 1150 0.22275683863494608 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTAT 798 0.1545738758527713 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATG 718 0.13907774794773156 No Hit GAATGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTT 634 0.12280681364743985 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 522 0.10111223458038424 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11486504809610698 0.0 2 0.0 0.0 0.0 0.794757659929725 0.0 3 0.0 0.0 0.0 0.9072982888400761 0.0 4 0.0 0.0 0.0 1.6280619380232364 0.0 5 0.0 0.0 0.0 4.365065529250878 0.0 6 0.0 0.0 0.0 4.607192527767125 0.0 7 0.0 0.0 0.0 5.300644251517652 0.0 8 0.0 0.0 0.0 6.068283687613557 0.0 9 0.0 0.0 0.0 6.193996025243193 0.0 10 0.0 0.0 0.0 9.775732288894313 0.0 11 0.0 0.0 0.0 10.057374413568409 0.0 12 0.0 0.0 0.0 13.248801955611341 0.0 13 0.0 0.0 0.0 13.51436684758396 0.0 14 0.0 0.0 0.0 13.749714290141752 0.0 15 0.0 0.0 0.0 14.497983566356357 0.0 16 0.0 0.0 0.0 14.860011854537847 0.0 17 0.0 0.0 0.0 15.08393090276567 0.0 18 1.937015988129966E-4 0.0 0.0 15.238504778618443 0.0 19 1.937015988129966E-4 0.0 0.0 16.185705596813996 0.0 20 1.937015988129966E-4 0.0 0.0 16.420859337772974 0.0 21 1.937015988129966E-4 0.0 0.0 16.582406471183013 0.0 22 1.937015988129966E-4 0.0 0.0 16.883031352540783 0.0 23 1.937015988129966E-4 0.0 0.0 17.04302887316032 0.0 24 1.937015988129966E-4 0.0 0.0 17.185012145090244 0.0 25 1.937015988129966E-4 0.0 0.0 17.30220161237211 0.0 26 1.937015988129966E-4 0.0 0.0 17.45367626264387 0.0 27 1.937015988129966E-4 0.0 0.0 17.648346369450934 0.0 28 1.937015988129966E-4 0.0 0.0 17.782387875829528 0.0 29 1.937015988129966E-4 0.0 0.0 17.930957002119097 0.0 30 1.937015988129966E-4 0.0 0.0 18.09928369148759 0.0 31 1.937015988129966E-4 0.0 0.0 18.239329947429386 0.0 32 1.937015988129966E-4 0.0 0.0 18.3900297913059 0.0 33 1.937015988129966E-4 0.0 0.0 18.534724885619205 0.0 34 1.937015988129966E-4 0.0 0.0 18.756513216260085 0.0 35 1.937015988129966E-4 0.0 0.0 18.940336033533622 0.0 36 1.937015988129966E-4 0.0 0.0 19.107500513309237 0.0 37 1.937015988129966E-4 0.0 0.0 19.29190443537921 0.0 38 1.937015988129966E-4 0.0 0.0 19.503620282881815 0.0 39 1.937015988129966E-4 0.0 0.0 19.88463132774698 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAAGC 20 7.029671E-4 45.000004 43 GTAGGCG 20 7.029671E-4 45.000004 19 AATGCGA 30 2.1631695E-6 45.000004 25 CGAGGCA 20 7.029671E-4 45.000004 32 AACGAGC 30 2.1631695E-6 45.000004 15 GATACGT 25 3.8878105E-5 45.0 5 CGATTAA 25 3.8878105E-5 45.0 19 TGCGAAT 25 3.8878105E-5 45.0 27 CGAATAT 25 3.8878105E-5 45.0 14 CGTTTTT 13315 0.0 44.44236 1 CACCGGT 140 0.0 43.392857 16 TACGGCT 1790 0.0 42.988827 7 GATACCT 1910 0.0 42.76178 5 ACGGCTG 1800 0.0 42.5 8 TGATACC 1930 0.0 42.318653 4 CGGCTGT 1835 0.0 42.179836 9 ATACCTG 1945 0.0 42.107967 6 ACCGGTC 75 0.0 42.0 17 TTGTTCG 65 0.0 41.538464 1 GCGCGAC 60 3.6379788E-12 41.250004 9 >>END_MODULE