SRR2933405.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933405.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	348971
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23753	6.806582781950363	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCG	6620	1.8970057683876311	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGC	5550	1.5903900324095697	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTC	3180	0.9112505050562941	No Hit
GCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	1936	0.5547738923864733	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTACGAGT	1672	0.47912290706104516	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCT	1158	0.33183273108653727	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCC	1131	0.32409569849643666	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTACGAGTCGTA	1089	0.31206031446739124	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTC	1013	0.290282000510071	No Hit
CTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGCT	865	0.24787159964581584	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCT	745	0.21348478813425759	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAGTACGAGTCGTATGCCG	544	0.15588687885239746	No Hit
TCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	540	0.1547406518020122	No Hit
CCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	538	0.15416753827681956	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGC	452	0.12952365669353616	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTACGAGTCGT	387	0.11089746712477543	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGTTCG	30	2.1611413E-6	45.000004	1
CGACCCT	30	2.1611413E-6	45.000004	12
TATACGG	25	3.8852028E-5	45.000004	27
GGTACCA	20	7.0265285E-4	45.0	8
ACCGCCT	35	1.2086821E-7	45.0	14
GACCGCC	45	3.8380676E-10	45.0	13
CTACGGG	20	7.0265285E-4	45.0	3
GTCGTTG	20	7.0265285E-4	45.0	1
AGCGACT	20	7.0265285E-4	45.0	19
GCGATCG	20	7.0265285E-4	45.0	9
CACCGAC	40	6.7921064E-9	45.0	16
CGTTTTT	9920	0.0	44.455643	1
CGATGAA	105	0.0	42.857147	19
TGTTCGG	90	0.0	42.5	2
ACCGGTG	80	0.0	42.1875	17
TGCTACG	80	0.0	42.1875	4
GCTACGG	80	0.0	42.1875	5
ACGGCTG	760	0.0	41.74342	8
GCGACCA	670	0.0	41.641792	11
CGACCAC	670	0.0	41.30597	12