SRR2933404.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933404.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	815599
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCG	25678	3.148360897941268	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTC	23650	2.899709293415024	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGC	22944	2.813147147066144	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22783	2.793407054201881	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCT	5858	0.7182451180052942	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTTGCCT	5352	0.6562048261461821	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTC	5231	0.6413691041798727	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTA	4800	0.5885245077544234	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC	4393	0.5386225338677463	TruSeq Adapter, Index 21 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCT	4280	0.5247676860810275	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGT	1875	0.22989238584157165	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTT	1536	0.18832784248141549	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTAT	1258	0.15424246474063846	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATG	1040	0.12751364334679174	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGA	40	6.8102963E-9	45.0	22
TTACGCC	20	7.0320815E-4	45.0	39
TATCGAA	20	7.0320815E-4	45.0	10
CGTTTTT	20410	0.0	44.327534	1
CCGATGA	910	0.0	43.763737	18
CGATGAA	905	0.0	43.25967	19
GATACCT	3265	0.0	42.588055	5
TGATACC	3295	0.0	42.26859	4
ATACCTG	3300	0.0	42.204544	6
CTACGGC	80	0.0	42.1875	6
GAATCTG	2875	0.0	41.713043	1
TACGGCT	2900	0.0	41.66379	7
ACGGCTG	2930	0.0	41.31399	8
GGCGACT	770	0.0	41.2013	10
CGACCAC	2660	0.0	40.93985	12
CGGCTGT	2935	0.0	40.783646	9
ACCACCG	1625	0.0	40.56923	14
AATCTGT	2965	0.0	40.522762	2
GCGACCA	2700	0.0	40.5	11
TACCTGT	3490	0.0	40.293697	7