SRR2933403.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933403.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	523010
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29336	5.609070572264393	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCG	12539	2.3974684996462785	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGC	9711	1.8567522609510334	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTC	7651	1.4628783388462936	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTTGCCT	2844	0.5437754536242136	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCT	2400	0.45888223934532796	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC	2387	0.45639662721554086	TruSeq Adapter, Index 21 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTC	1912	0.36557618401177794	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTA	1670	0.3193055582111241	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCT	1094	0.20917382076824534	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTTGTTGCCTCGTATGCCG	1007	0.19253933959197722	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGT	733	0.14015028393338558	No Hit
GAATCTTTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTC	660	0.1261926158199652	No Hit
CTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGCT	638	0.12198619529263303	TruSeq Adapter, Index 14 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTT	560	0.10707252251390986	No Hit
GAATGATACGGCTGCCTCCTATACACATCTGACGCTTGTTGCCTCGTATGC	552	0.10554291504942545	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGGGT	25	3.8878796E-5	45.0	4
ACCGCCG	25	3.8878796E-5	45.0	14
TCGTCGG	20	7.029758E-4	45.0	2
AACGAAT	25	3.8878796E-5	45.0	24
GTGCGAA	25	3.8878796E-5	45.0	43
CGTTTTT	14560	0.0	44.62912	1
AATGATC	390	0.0	43.26923	2
ATCCGGC	115	0.0	43.043476	6
GATACCT	1585	0.0	42.72871	5
GCGACCG	90	0.0	42.500004	11
TACGGCT	1425	0.0	42.31579	7
TGATACC	1590	0.0	42.31132	4
TGATCCG	160	0.0	42.1875	4
ACGGCTG	1430	0.0	42.01049	8
GAATGAT	5200	0.0	41.971153	1
CGGGATA	60	3.6379788E-12	41.249996	6
AATGATA	4970	0.0	41.106636	2
ATGATAC	5010	0.0	41.0479	3
ATGATCC	210	0.0	40.714287	3
CGGGAAT	105	0.0	40.714287	6