##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933403.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 523010 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.21020056977878 31.0 26.0 31.0 16.0 33.0 2 28.321035926655323 31.0 28.0 33.0 16.0 34.0 3 28.491451406282863 31.0 28.0 33.0 16.0 34.0 4 31.72845261084874 35.0 28.0 37.0 19.0 37.0 5 33.57233131297681 35.0 33.0 37.0 28.0 37.0 6 32.29608038087226 35.0 32.0 37.0 17.0 37.0 7 32.105575419208044 35.0 32.0 35.0 25.0 37.0 8 32.59969599051643 35.0 32.0 35.0 25.0 37.0 9 32.879948758149936 35.0 31.0 37.0 25.0 39.0 10 31.588306150934017 35.0 28.0 39.0 15.0 39.0 11 32.21877210760788 35.0 27.0 39.0 17.0 39.0 12 33.07701573583679 35.0 31.0 39.0 23.0 39.0 13 33.19644939867307 35.0 31.0 39.0 23.0 39.0 14 33.47029884705837 36.0 31.0 40.0 20.0 41.0 15 33.91053708342097 36.0 32.0 40.0 23.0 41.0 16 34.121022542590005 36.0 32.0 40.0 25.0 41.0 17 32.12913519817977 35.0 27.0 39.0 18.0 41.0 18 32.834268943232445 36.0 30.0 39.0 22.0 39.0 19 32.646176937343455 36.0 30.0 37.0 20.0 39.0 20 32.12971071298828 34.0 30.0 36.0 23.0 39.0 21 32.610898453184454 35.0 31.0 37.0 23.0 39.0 22 32.9497906349783 35.0 31.0 37.0 25.0 39.0 23 33.89100017208084 35.0 32.0 38.0 27.0 40.0 24 32.28394294564158 35.0 31.0 37.0 21.0 39.0 25 31.464232041452362 34.0 29.0 37.0 18.0 39.0 26 30.750478958337318 33.0 25.0 37.0 19.0 39.0 27 32.463392669356224 34.0 30.0 37.0 22.0 39.0 28 32.38174604692071 35.0 31.0 37.0 21.0 39.0 29 32.64206038125466 35.0 31.0 38.0 22.0 40.0 30 31.650972256744613 35.0 30.0 38.0 18.0 40.0 31 31.947218982428634 35.0 30.0 37.0 20.0 40.0 32 31.769964245425516 35.0 30.0 38.0 18.0 40.0 33 31.58506529511864 35.0 30.0 38.0 15.0 40.0 34 30.737192405498938 35.0 29.0 38.0 10.0 40.0 35 30.251482763235884 35.0 27.0 38.0 8.0 40.0 36 29.657423376226077 35.0 24.0 38.0 7.0 40.0 37 29.725555916712874 35.0 24.0 38.0 7.0 40.0 38 29.675920154490353 35.0 24.0 38.0 8.0 40.0 39 29.210915661268427 34.0 23.0 38.0 7.0 40.0 40 29.035071987151298 34.0 23.0 38.0 7.0 40.0 41 28.347945545974266 33.0 21.0 38.0 7.0 40.0 42 28.92895164528403 34.0 22.0 38.0 7.0 40.0 43 28.951649108047647 34.0 22.0 38.0 7.0 40.0 44 28.974061681421006 34.0 22.0 38.0 7.0 40.0 45 29.256163362077206 35.0 23.0 38.0 7.0 40.0 46 28.980055830672455 34.0 22.0 38.0 7.0 40.0 47 29.111630752758074 34.0 23.0 38.0 7.0 40.0 48 28.74847517255884 34.0 22.0 38.0 7.0 40.0 49 28.695566050362327 34.0 22.0 37.0 7.0 40.0 50 28.905066824726106 34.0 22.0 38.0 7.0 40.0 51 27.128431578746103 32.0 20.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 16.0 10 26.0 11 32.0 12 45.0 13 56.0 14 118.0 15 251.0 16 566.0 17 1079.0 18 1879.0 19 2906.0 20 4795.0 21 6488.0 22 8815.0 23 12284.0 24 16556.0 25 22447.0 26 27796.0 27 29071.0 28 28394.0 29 29706.0 30 33184.0 31 37866.0 32 43011.0 33 47893.0 34 52017.0 35 53410.0 36 38572.0 37 19753.0 38 3912.0 39 62.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.59778971721382 2.4569319898281106 33.38349171143955 38.56178658151852 2 39.3485784210627 14.607942486759335 32.53704518078048 13.506433911397487 3 12.609127932544311 14.631269000592722 59.322192692300334 13.437410374562628 4 11.552933978317814 2.768398309783752 69.56387067168887 16.114797040209556 5 20.78067340968624 3.298598497160666 59.28108449169231 16.639643601460776 6 13.246591843368197 12.911416607713043 62.21104758991224 11.63094395900652 7 51.13076231812011 1.3166096250549704 44.608133687692394 2.944494369132521 8 51.421005334506035 9.84474484235483 34.58939599625246 4.144853826886676 9 47.6094147339439 2.7043459972084665 34.45268732911417 15.233551939733466 10 28.245540238236362 16.95206592608172 41.25064530314908 13.551748532532839 11 23.829181086403704 16.024741400738034 46.56889925622837 13.577178256629892 12 18.3476415364907 14.050018164088641 49.66769277834076 17.934647521079903 13 17.636182864572376 14.947515343874878 55.436798531576834 11.979503259975909 14 15.357832546222824 18.388558536165654 49.38796581327317 16.86564310433835 15 12.123095160704384 14.952868970000575 56.84575820730006 16.078277661994992 16 14.151737060476854 15.427238484923805 47.622033995525896 22.79899045907344 17 15.041777403873729 16.549014359190075 51.8496778264278 16.5595304105084 18 15.287279401923481 14.708322976616126 50.69998661593469 19.304411005525708 19 15.213093439895985 18.30729813961492 47.25588420871494 19.223724211774154 20 16.48190283168582 17.999847039253552 52.592493451368036 12.925756677692588 21 17.136192424619033 21.17798894858607 47.48513412745454 14.200684499340358 22 14.525152482744117 14.781744134911378 51.24127645742911 19.451826924915395 23 14.926674442171278 21.07779965966234 49.15450947400623 14.84101642416015 24 16.0195789755454 16.91688495439858 47.76983231678171 19.293703753274315 25 14.223055008508442 22.65119213781763 45.63297068889696 17.492782164776965 26 14.186153228427756 16.078468862928048 50.51222729966922 19.22315060897497 27 15.726850347029695 17.634270855241773 47.91342421751018 18.72545458021835 28 13.024607560084894 18.245731439169425 51.598248599453164 17.13141240129252 29 16.428940173228046 15.77388577656259 50.34894170283552 17.448232347373853 30 15.226286304277165 19.2055601231334 51.46306953977935 14.105084032810081 31 19.617598133878893 15.744058431005142 46.65474847517256 17.983594959943407 32 18.118965220550276 19.172673562646985 47.30521404944456 15.403147167358178 33 16.83180053918663 16.467180359840157 44.786715359170955 21.91430374180226 34 20.398462744498193 18.998680713561882 44.49647234278503 16.106384199154892 35 14.793216190895011 20.557924322670694 43.18024511959619 21.46861436683811 36 20.603047742872985 19.503642377774806 39.799047819353355 20.09426205999885 37 17.400432114108717 20.762700521978548 44.57639433280434 17.260473031108393 38 21.176841742987705 20.712797078449743 39.425823598019164 18.68453758054339 39 22.13131680082599 19.901149117607694 39.89885470641097 18.068679375155348 40 18.93921722338005 19.874763388845338 40.771878166765454 20.414141221009157 41 21.076078851264793 21.359821035926654 35.594348100418735 21.96975201238982 42 17.68761591556567 20.509550486606372 40.4212156555324 21.38161794229556 43 19.06655704479838 19.365786505038145 38.008451081241276 23.5592053689222 44 20.811647960842052 20.04818263513126 38.54324009101164 20.596929313015046 45 18.857574424963193 19.314162253111792 37.4717500621403 24.356513259784705 46 21.306475975602762 21.743370107646125 37.20158314372574 19.748570773025374 47 15.945393013517906 19.7581308196784 45.16548440756391 19.130991759239784 48 20.217969063689033 22.154643314659374 36.276744230511845 21.350643391139748 49 17.863903175847497 18.984531844515402 41.08028527179213 22.071279707844973 50 18.789506892793636 18.684919982409514 38.774593220014914 23.750979904781936 51 18.48913022695551 19.216649777250915 37.27844591881608 25.015774076977497 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 88.0 1 426.0 2 764.0 3 22349.0 4 43934.0 5 29790.5 6 15647.0 7 14841.0 8 14035.0 9 13584.5 10 13134.0 11 12518.5 12 11903.0 13 11253.5 14 10604.0 15 9769.0 16 8934.0 17 8334.5 18 7735.0 19 7142.5 20 6550.0 21 6026.0 22 5502.0 23 5318.5 24 5135.0 25 5090.0 26 5061.5 27 5078.0 28 5417.0 29 5756.0 30 6336.5 31 6917.0 32 7647.5 33 8378.0 34 9278.0 35 10178.0 36 10985.5 37 11793.0 38 12458.0 39 13123.0 40 14082.5 41 15042.0 42 16435.5 43 17829.0 44 20166.5 45 22504.0 46 43473.5 47 64443.0 48 52538.5 49 40634.0 50 37289.0 51 33944.0 52 28909.0 53 23874.0 54 22164.0 55 20454.0 56 18752.0 57 17050.0 58 15850.0 59 14650.0 60 13480.5 61 12311.0 62 10734.5 63 9158.0 64 7848.0 65 6538.0 66 5670.0 67 4802.0 68 3975.5 69 3149.0 70 2644.5 71 2140.0 72 1831.5 73 1523.0 74 1353.5 75 1001.0 76 818.0 77 613.0 78 408.0 79 288.0 80 168.0 81 135.0 82 102.0 83 67.5 84 33.0 85 21.0 86 9.0 87 7.0 88 5.0 89 3.5 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 523010.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.454650453342815 #Duplication Level Percentage of deduplicated Percentage of total 1 81.90700862918618 38.04961455547778 2 6.832772896373207 6.348281530561843 3 2.866464398250494 3.9948180497303505 4 1.8370982297038034 3.413670244373803 5 1.315644808424883 3.0558909848066564 6 1.0280833281070418 2.865555098647319 7 0.7899264483747216 2.5687029930168768 8 0.6512815403227447 2.4204045041926237 9 0.5089983057102776 2.1280804535803206 >10 2.151412746688519 14.672177672622619 >50 0.06737103641560939 2.223640672012214 >100 0.03640546688093781 3.3417787211289873 >500 0.00292917549616741 0.8141102486235936 >1k 0.00292917549616741 2.588124128503946 >5k 8.3690728461926E-4 3.375019612369348 >10k+ 8.3690728461926E-4 8.140130530351716 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29336 5.609070572264393 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCG 12539 2.3974684996462785 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGC 9711 1.8567522609510334 No Hit GAATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTC 7651 1.4628783388462936 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTTGCCT 2844 0.5437754536242136 No Hit GAACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCT 2400 0.45888223934532796 No Hit GCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC 2387 0.45639662721554086 TruSeq Adapter, Index 21 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTC 1912 0.36557618401177794 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTA 1670 0.3193055582111241 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCT 1094 0.20917382076824534 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCTTGTTGCCTCGTATGCCG 1007 0.19253933959197722 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGT 733 0.14015028393338558 No Hit GAATCTTTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTC 660 0.1261926158199652 No Hit CTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGCT 638 0.12198619529263303 TruSeq Adapter, Index 14 (95% over 22bp) GAATGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTT 560 0.10707252251390986 No Hit GAATGATACGGCTGCCTCCTATACACATCTGACGCTTGTTGCCTCGTATGC 552 0.10554291504942545 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14856312498804994 0.0 2 0.0 0.0 0.0 0.8261792317546509 0.0 3 0.0 0.0 0.0 1.0175713657482648 0.0 4 0.0 0.0 0.0 1.8003479856981701 0.0 5 0.0 0.0 0.0 3.774115217682262 0.0 6 0.0 0.0 0.0 4.141794611957707 0.0 7 0.0 0.0 0.0 4.618649739010726 0.0 8 0.0 0.0 0.0 5.31787155121317 0.0 9 0.0 0.0 0.0 5.520162138391235 0.0 10 0.0 0.0 0.0 8.626794898759107 0.0 11 0.0 0.0 0.0 9.272480449704595 0.0 12 0.0 0.0 0.0 11.963059979732702 0.0 13 0.0 0.0 0.0 12.26324544463777 0.0 14 0.0 0.0 0.0 12.468404045811743 0.0 15 0.0 0.0 0.0 13.042006844993404 0.0 16 0.0 0.0 0.0 13.398405384218275 0.0 17 0.0 0.0 0.0 13.732815816141184 0.0 18 0.0 0.0 0.0 14.042561327699278 0.0 19 0.0 0.0 0.0 14.960325806389935 0.0 20 0.0 0.0 0.0 15.30410508403281 0.0 21 0.0 0.0 0.0 15.664901244718074 0.0 22 0.0 0.0 0.0 16.170627712663237 0.0 23 0.0 0.0 0.0 16.523202233226897 0.0 24 0.0 0.0 0.0 16.788015525515764 0.0 25 0.0 0.0 0.0 17.023383874113307 0.0 26 0.0 0.0 0.0 17.249192176057818 0.0 27 0.0 0.0 0.0 17.496988585304297 0.0 28 0.0 0.0 0.0 17.72929771897287 0.0 29 0.0 0.0 0.0 17.979579740349134 0.0 30 0.0 0.0 0.0 18.273264373530143 0.0 31 0.0 0.0 0.0 18.509971128659107 0.0 32 0.0 0.0 0.0 18.758532341637828 0.0 33 0.0 0.0 0.0 18.998298311695763 0.0 34 0.0 0.0 0.0 19.27114204317317 0.0 35 0.0 0.0 0.0 19.566547484751727 0.0 36 0.0 0.0 0.0 19.800577426817842 0.0 37 0.0 0.0 0.0 20.05238905565859 0.0 38 0.0 0.0 0.0 20.365958585877898 0.0 39 0.0 0.0 0.0 20.862889810902278 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATGGGT 25 3.8878796E-5 45.0 4 ACCGCCG 25 3.8878796E-5 45.0 14 TCGTCGG 20 7.029758E-4 45.0 2 AACGAAT 25 3.8878796E-5 45.0 24 GTGCGAA 25 3.8878796E-5 45.0 43 CGTTTTT 14560 0.0 44.62912 1 AATGATC 390 0.0 43.26923 2 ATCCGGC 115 0.0 43.043476 6 GATACCT 1585 0.0 42.72871 5 GCGACCG 90 0.0 42.500004 11 TACGGCT 1425 0.0 42.31579 7 TGATACC 1590 0.0 42.31132 4 TGATCCG 160 0.0 42.1875 4 ACGGCTG 1430 0.0 42.01049 8 GAATGAT 5200 0.0 41.971153 1 CGGGATA 60 3.6379788E-12 41.249996 6 AATGATA 4970 0.0 41.106636 2 ATGATAC 5010 0.0 41.0479 3 ATGATCC 210 0.0 40.714287 3 CGGGAAT 105 0.0 40.714287 6 >>END_MODULE