SRR2933400.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933400.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	480897
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCG	18041	3.751530993123268	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17401	3.618446361694916	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTC	13921	2.894798678303254	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGC	13517	2.810789004714107	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTC	3417	0.7105471649854335	No Hit
GAACTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCT	3352	0.6970307571059915	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCACCGTAT	3040	0.6321519992846701	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCT	2811	0.584532654601713	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCACCGTATCGTA	2685	0.5583316177892563	No Hit
GCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC	2217	0.4610134810572742	TruSeq Adapter, Index 14 (95% over 23bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCACCGTATCGT	1043	0.21688636028089175	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTT	753	0.15658238666491991	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATG	662	0.13765941563370118	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	630	0.13100518406228362	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCACCGTATCGTAT	614	0.12767806827657482	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	538	0.11187426829445807	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	522	0.10854715250874927	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	498	0.1035564788301861	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGAT	30	2.1628584E-6	45.000004	5
CACTAGG	30	2.1628584E-6	45.000004	29
AGGCACG	30	2.1628584E-6	45.000004	10
CTATCGT	55	1.8189894E-12	45.0	41
GCAACGA	20	7.02919E-4	45.0	9
GCACGGG	25	3.8874103E-5	45.0	3
GTCTAGG	20	7.02919E-4	45.0	2
CCTATCG	55	1.8189894E-12	45.0	40
CGTTTTT	14780	0.0	44.512856	1
CACCGGT	190	0.0	43.81579	16
GATACCT	1970	0.0	43.743656	5
CGATGAA	625	0.0	43.56	19
TGATACC	2060	0.0	42.269417	4
CCGATGA	640	0.0	42.1875	18
ATACCTG	2050	0.0	42.036587	6
ACGGCTG	1900	0.0	41.92105	8
CCACCGG	215	0.0	41.860466	15
CGGCTGT	1915	0.0	41.59269	9
TACGGCT	1930	0.0	41.15285	7
TGATCTG	460	0.0	41.086956	4