SRR2933399.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933399.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	291846
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25873	8.865291969052173	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCG	8115	2.7805760572356655	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGC	4932	1.689932361587961	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTC	4079	1.3976549275988022	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCACCGTAT	1489	0.5102005852401609	No Hit
GAACTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCT	1339	0.45880361560549054	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTC	1104	0.3782816965111737	No Hit
GCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC	960	0.32894060566189015	TruSeq Adapter, Index 14 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCACCGTATCGTA	919	0.3148921006284136	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCT	757	0.25938337342296963	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTCACCGTATCGTATGCCG	637	0.21826579771523336	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	426	0.1459673937624638	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCACCGTATCGT	421	0.1442541614413081	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	411	0.14082769679899673	No Hit
GAATCTTTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTC	388	0.1329468281216806	No Hit
GAATGACTCTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCT	336	0.11512921198166155	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCC	300	0.10279393926934068	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCGG	35	1.2077726E-7	45.000004	2
ACCGCCT	30	2.1599153E-6	45.000004	14
GCGAGAC	20	7.024626E-4	45.0	21
TCCGACC	20	7.024626E-4	45.0	35
GTCAAGC	20	7.024626E-4	45.0	16
TCAAGCG	20	7.024626E-4	45.0	17
CAAAGTG	20	7.024626E-4	45.0	33
GTCGGGA	25	3.8836304E-5	44.999996	4
CGTTTTT	11995	0.0	44.606087	1
CGATGAA	140	0.0	43.39286	19
GATACCT	1105	0.0	43.16742	5
ACGGCTG	715	0.0	43.11189	8
AATGCTA	95	0.0	42.63158	2
TGATACC	1115	0.0	42.578476	4
AATGATC	230	0.0	42.065216	2
TGATCCG	70	0.0	41.785717	4
TATACTA	70	0.0	41.785717	44
ATGATAC	2870	0.0	41.707317	3
AATGATA	2855	0.0	41.690014	2
ATACCTG	1140	0.0	41.644737	6