SRR2933398.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933398.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	375151
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCG	13070	3.4839304706638123	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11070	2.950811806445938	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGC	11068	2.95027868778172	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC	9771	2.604551234036428	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATAGCAGGT	2424	0.6461398210320644	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTC	2214	0.5901623612891875	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCT	2029	0.540848884849034	No Hit
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	2003	0.5339183422142018	Illumina Single End Adapter 2 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCT	1942	0.5176582229555565	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTA	1900	0.5064627310069812	No Hit
GAATGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTT	689	0.1836593798230579	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGT	675	0.1799275491735328	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTAT	514	0.13701149670399385	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATG	425	0.11328771614629843	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCACGGG	20	7.027206E-4	45.0	3
CGTTCAT	35	1.2090095E-7	45.0	17
CGTTAGG	25	3.885765E-5	45.0	2
TAGGGCG	45	3.8380676E-10	45.0	5
GCTACGA	30	2.1615779E-6	44.999996	10
CGTTTTT	9460	0.0	44.001057	1
TGATCTG	220	0.0	42.954548	4
GATACCT	1400	0.0	42.910713	5
TGATACC	1400	0.0	42.75	4
TACGGCT	1335	0.0	42.30337	7
ACCCGTC	80	0.0	42.1875	17
CACCCGT	75	0.0	42.0	16
ACGGCTG	1345	0.0	41.988846	8
CGGCTGT	1365	0.0	41.20879	9
ATACCTG	1475	0.0	41.186443	6
AATGATC	255	0.0	40.588234	2
TGCGTTG	50	1.0768417E-9	40.5	1
CCGATGA	385	0.0	40.324673	18
GAATCTG	1180	0.0	40.23305	1
CACGACC	90	0.0	40.0	27