SRR2933397.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933397.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	269990
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17013	6.301344494240528	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCG	5565	2.0611874513870885	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGC	3816	1.4133856809511463	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC	2441	0.9041075595392422	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATAGCAGGT	967	0.35816141338568097	No Hit
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	940	0.3481610430015927	Illumina Single End Adapter 2 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCT	656	0.24297196192451573	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTC	607	0.22482314159783695	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTA	596	0.22074891662654172	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCT	458	0.16963591244120155	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCATAGCAGGTCGTATGCCG	457	0.16926552835290196	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	273	0.10111485610578169	No Hit
GAATCTTTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC	272	0.10074447201748214	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTTG	75	0.0	45.000004	1
GCTACGA	35	1.2073178E-7	45.000004	10
CACCGGT	105	0.0	45.000004	16
CCACCGG	105	0.0	45.000004	15
AATGCGA	25	3.882851E-5	45.0	25
TGCGAAT	25	3.882851E-5	45.0	27
CCCCCGT	25	3.882851E-5	45.0	16
TAATGCG	25	3.882851E-5	45.0	24
CTACGAA	30	2.1593114E-6	44.999996	11
CGGTGTC	60	0.0	44.999996	19
CCGGTGA	30	2.1593114E-6	44.999996	18
CGTTTTT	7605	0.0	44.1716	1
TACGGCT	465	0.0	43.54839	7
CCGATGA	115	0.0	43.043476	18
ACCACCG	305	0.0	42.78688	14
GATACCT	690	0.0	42.717392	5
TGATACC	680	0.0	42.683823	4
ACCGGTG	95	0.0	42.63158	17
CGACCAC	535	0.0	41.635513	12
GACCACC	540	0.0	41.250004	13