SRR2933395.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933395.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	532012
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29192	5.4870942760689605	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCG	11941	2.244498244400502	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTC	9257	1.7399983459019723	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGC	8132	1.5285369502943542	No Hit
GAACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCT	3096	0.5819417607121644	No Hit
GCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	2612	0.49096636917964254	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCCATGTTT	2277	0.4279978647098186	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTC	1983	0.3727359533243611	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTA	1200	0.22555882198145907	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCT	1171	0.22010781711690716	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTT	1159	0.21785222889709252	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCCCATGTTTCGTATGCCG	967	0.18176281738005912	No Hit
GAATCTTTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTC	804	0.15112441072757757	No Hit
GAATCTGTCTCTTATCCACATCTGACGCCCCATGTTTCGTATGCCGTCTTC	615	0.11559889626549778	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCCTGTTTCGTATGC	548	0.10300519537153298	No Hit
GAATGCTGCCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTT	547	0.10281722968654841	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCCATGTTTCGT	539	0.10131350420667203	No Hit
GAATCTGTCTCTTATCCCCATCTGACGCCCCATGTTTCGTATGCCGTCTTC	533	0.10018571009676473	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCTG	85	0.0	45.000004	1
ATGGGCG	20	7.029867E-4	45.0	5
GGATCGA	20	7.029867E-4	45.0	8
TATACGG	25	3.887971E-5	45.0	27
TGCGTCG	25	3.887971E-5	45.0	1
CGTTTTT	17865	0.0	44.672543	1
CACCGGT	125	0.0	43.199997	16
ACGGCTG	1355	0.0	42.84133	8
TACGGCT	1360	0.0	42.683826	7
GAATGAT	4945	0.0	41.40546	1
CGGCTGT	1365	0.0	41.043957	9
CGACCAC	925	0.0	40.864864	12
ATACGGC	3005	0.0	40.507484	6
GCGACCA	945	0.0	40.47619	11
ATGATAC	4795	0.0	40.40146	3
AATGATA	4745	0.0	40.353004	2
TGATACC	1810	0.0	40.276245	4
CGGGATC	95	0.0	40.26316	6
GTTTTTT	20045	0.0	40.173363	2
AATGATC	405	0.0	40.0	2