SRR2933391.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933391.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	428281
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22661	5.291152304211487	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCG	9057	2.1147330841200054	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTC	5681	1.3264655681666944	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGC	5362	1.2519817596391154	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGTCACCT	1883	0.4396646127192194	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCT	1773	0.4139805408131577	TruSeq Adapter, Index 7 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC	1637	0.38222568827475417	Illumina PCR Primer Index 3 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTC	1065	0.2486685143632335	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTA	884	0.20640654149962293	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCT	785	0.1832908767841674	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTT	726	0.16951487458000705	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTAGTCACCTCGTATGCCG	714	0.1667129758266185	No Hit
GAATCTTTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTC	636	0.14850063392959295	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCC	450	0.10507120325207049	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACCG	55	1.8189894E-12	45.0	11
GCTTGCG	40	6.7975634E-9	45.0	1
TCGGTTG	25	3.8866925E-5	45.0	1
ATACAGC	25	3.8866925E-5	45.0	28
CTTACGG	25	3.8866925E-5	45.0	2
CGATGAA	120	0.0	44.999996	19
CGTTTTT	15255	0.0	44.454277	1
CACCGGT	110	0.0	42.954544	16
CCACCGG	110	0.0	42.954544	15
ACGGCTG	725	0.0	42.517242	8
TACGGCT	725	0.0	42.206898	7
CGGCTGT	670	0.0	41.97761	9
CGACCAC	650	0.0	41.538464	12
CCGATGA	130	0.0	41.53846	18
CCTATAC	65	0.0	41.53846	18
CCTAGTC	60	3.6379788E-12	41.249996	41
TGATACC	1260	0.0	40.892853	4
GAATGAT	3250	0.0	40.707695	1
GATACCT	1265	0.0	40.55336	5
ATGATAC	3220	0.0	40.108696	3